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The map label for this gene is ypfJ [C]

Identifier: 62390519

GI number: 62390519

Start: 1736594

End: 1737418

Strand: Direct

Name: ypfJ [C]

Synonym: cg1842

Alternate gene names: 62390519

Gene position: 1736594-1737418 (Clockwise)

Preceding gene: 62390511

Following gene: 62390523

Centisome position: 52.9

GC content: 56.85

Gene sequence:

>825_bases
ATGGCCGTTGGTGGCGGCATCGGTGGCCTGCTACTAGTCGGGCTCTTCTTGCTCCTTGGCGGTAACCCTGCCGAGATCGA
CCAGGTTTTAGGTGGCGATCAAACCCAGATCGAGTCTGGAGAGTCCACCGGAGCCGGCGACTTTGATCACTGCCAAACCG
GCGCAGATGCCAACGCCAGTGATGATTGTCGCCTTTACTACACCTCATTCTCCGTCAATGAAATGTGGCAGACTTTGCTT
CCAGCTCAGGCTGGTATCGAATACACCGAGCCGACATTGACTCTTTTCAAAAACTCCACCCAAACCGGCTGCGGTTTCGC
TTCTGCGTCCACTGGGCCGTTTTACTGTCCGTCAGACCAAGATGCTTATTTTGACTTGACTTTCTTCGATCAGATGCGTC
AGTTCGGTGCAGAAAACGCCCCGCTTGCCCAGATGTACATCGTGGCGCACGAGTACGGCCACCACGTCCAAAACCTCGAG
GGCACACTCGGACTGTCCAATTACAACGATCCGGGCGCTGATTCCAACGCCGTCAAGATCGAGTTGCAGGCCGATTGCTA
CGCAGGCATTTGGGCTAATCACTCCAGCGAAGGCCCGGATCCGCTACTCCAACCCATCACCGAATCTGAGCTAGATTCCG
CTCTCCTTGCTGCAAGCGCCGTGGGCGACGACAATATCCAGCAACGATCCGGTGGCGATGTCAATCCTGAAAGCTGGACT
CACGGCTCATCGCAGCAGCGCAAAGACGCGTTCCTCGCCGGCTACAACACCGGCCAGATGAGCGCCTGCGACTTCCTCGG
CCGGGGCGTCTACAACGACGCTTAA

Upstream 100 bases:

>100_bases
TTTCCCTATGTAATGTGCCATGATTTCTTTCATGACCTTTCGTGATGATGTAACTCGATCAGGTGGAAATGCCCGCAAAA
GTGGCGGCGGTGGCCGAGGG

Downstream 100 bases:

>100_bases
AGCATTGCTTTTCGACGTCTCCCCACACCGATTAATTCCGGCCTTAGGCAACTAGCTTAAGGCCGTTTCTTCATCTTTAG
GGCCAGTGGATTCAGTAAGC

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MAVGGGIGGLLLVGLFLLLGGNPAEIDQVLGGDQTQIESGESTGAGDFDHCQTGADANASDDCRLYYTSFSVNEMWQTLL
PAQAGIEYTEPTLTLFKNSTQTGCGFASASTGPFYCPSDQDAYFDLTFFDQMRQFGAENAPLAQMYIVAHEYGHHVQNLE
GTLGLSNYNDPGADSNAVKIELQADCYAGIWANHSSEGPDPLLQPITESELDSALLAASAVGDDNIQQRSGGDVNPESWT
HGSSQQRKDAFLAGYNTGQMSACDFLGRGVYNDA

Sequences:

>Translated_274_residues
MAVGGGIGGLLLVGLFLLLGGNPAEIDQVLGGDQTQIESGESTGAGDFDHCQTGADANASDDCRLYYTSFSVNEMWQTLL
PAQAGIEYTEPTLTLFKNSTQTGCGFASASTGPFYCPSDQDAYFDLTFFDQMRQFGAENAPLAQMYIVAHEYGHHVQNLE
GTLGLSNYNDPGADSNAVKIELQADCYAGIWANHSSEGPDPLLQPITESELDSALLAASAVGDDNIQQRSGGDVNPESWT
HGSSQQRKDAFLAGYNTGQMSACDFLGRGVYNDA
>Mature_273_residues
AVGGGIGGLLLVGLFLLLGGNPAEIDQVLGGDQTQIESGESTGAGDFDHCQTGADANASDDCRLYYTSFSVNEMWQTLLP
AQAGIEYTEPTLTLFKNSTQTGCGFASASTGPFYCPSDQDAYFDLTFFDQMRQFGAENAPLAQMYIVAHEYGHHVQNLEG
TLGLSNYNDPGADSNAVKIELQADCYAGIWANHSSEGPDPLLQPITESELDSALLAASAVGDDNIQQRSGGDVNPESWTH
GSSQQRKDAFLAGYNTGQMSACDFLGRGVYNDA

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=274, Percent_Identity=34.3065693430657, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 29112; Mature: 28981

Theoretical pI: Translated: 3.80; Mature: 3.80

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGGGIGGLLLVGLFLLLGGNPAEIDQVLGGDQTQIESGESTGAGDFDHCQTGADANAS
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHEECCCCCCCCCCHHHHCCCCCCCCC
DDCRLYYTSFSVNEMWQTLLPAQAGIEYTEPTLTLFKNSTQTGCGFASASTGPFYCPSDQ
CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCC
DAYFDLTFFDQMRQFGAENAPLAQMYIVAHEYGHHVQNLEGTLGLSNYNDPGADSNAVKI
CCEEEHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEE
ELQADCYAGIWANHSSEGPDPLLQPITESELDSALLAASAVGDDNIQQRSGGDVNPESWT
EEECCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCC
HGSSQQRKDAFLAGYNTGQMSACDFLGRGVYNDA
CCCCHHHHHHEEECCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
AVGGGIGGLLLVGLFLLLGGNPAEIDQVLGGDQTQIESGESTGAGDFDHCQTGADANAS
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHEECCCCCCCCCCHHHHCCCCCCCCC
DDCRLYYTSFSVNEMWQTLLPAQAGIEYTEPTLTLFKNSTQTGCGFASASTGPFYCPSDQ
CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCC
DAYFDLTFFDQMRQFGAENAPLAQMYIVAHEYGHHVQNLEGTLGLSNYNDPGADSNAVKI
CCEEEHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEE
ELQADCYAGIWANHSSEGPDPLLQPITESELDSALLAASAVGDDNIQQRSGGDVNPESWT
EEECCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCC
HGSSQQRKDAFLAGYNTGQMSACDFLGRGVYNDA
CCCCHHHHHHEEECCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]