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The map label for this gene is yqgF [C]

Identifier: 62390514

GI number: 62390514

Start: 1728091

End: 1728639

Strand: Reverse

Name: yqgF [C]

Synonym: cg1837

Alternate gene names: 62390514

Gene position: 1728639-1728091 (Counterclockwise)

Preceding gene: 62390515

Following gene: 62390513

Centisome position: 52.66

GC content: 56.83

Gene sequence:

>549_bases
ATGAAGGTTTCCGCCGATACACCCGGTCACGATGATCCAGGCCCAGGCCGGCGCCTTGGCTTAGATGTCGGCACCGTGCG
CATCGGAGTGGCAGCCTCTGACCGCGATGCCAAGCTTGCCATGCCTGTGGAAACCGTTCCGCGGGAAACTGGATTCAAAG
GGCCAGACCTGGCCGATATTGATCGGTTGGTCGCCATCGTTGAGGAATACAACGCCGTGGAAGTCATTGTTGGTCTACCC
ACAGATCTGCAGGGAAATGGCTCCGCCAGTGTGAAGCATGCAAAGGAAATTGCTTTCCGCGTCCGTCGGCGCCTCACCAA
TGCTGGAAAGAACATTCCGGTACGGCTTGGCGACGAACGCCTCACCACCGTCGTGGCCACCCAAGCCTTGCGGGCCTCAG
GAGTCAGCGAAAAAGCGGGACGTAAAGTTATTGATCAAGCTGCCGCAGTAGAAATCCTTCAAACCTGGTTGGATGCTCGC
ACCCGAGCCCTTGAACCACAATCCACAGACACCCAAGATTTCGACGAGAAGGGAAATTTCCCAGGATGA

Upstream 100 bases:

>100_bases
TTCTTCCGTACGGCTATGCTTAAAAGCTAAATTTGTCTTTGTGCCTTGCAACACATTAATTTCTTAACACTAAACAATGG
AAAGGTAAGCGGGTTTTTCT

Downstream 100 bases:

>100_bases
ACCAAATCCGAAACCGCCGGATGGAGCCCGTCTACGTAAAGCGCCGCCAACGGTTTATTGCCGTGACGATCGCTTCACTC
ATCCTCATTATCGGTGCCAT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAVEVIVGLP
TDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDAR
TRALEPQSTDTQDFDEKGNFPG

Sequences:

>Translated_182_residues
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAVEVIVGLP
TDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDAR
TRALEPQSTDTQDFDEKGNFPG
>Mature_182_residues
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADIDRLVAIVEEYNAVEVIVGLP
TDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDERLTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDAR
TRALEPQSTDTQDFDEKGNFPG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=143, Percent_Identity=32.8671328671329, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CORGL (Q8NQ23)

Other databases:

- EMBL:   BA000036
- EMBL:   BX927152
- RefSeq:   NP_600845.1
- RefSeq:   YP_225916.1
- ProteinModelPortal:   Q8NQ23
- SMR:   Q8NQ23
- GeneID:   1019600
- GeneID:   3343600
- GenomeReviews:   BA000036_GR
- GenomeReviews:   BX927147_GR
- KEGG:   cgb:cg1837
- KEGG:   cgl:NCgl1569
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   Q8NQ23
- ProtClustDB:   PRK00109
- BioCyc:   CGLU196627:CG1837-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 19477; Mature: 19477

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADI
CCCCCCCCCCCCCCCCCEECCEECEEEEEEEECCCCCEEECCHHHCCHHCCCCCCCHHHH
DRLVAIVEEYNAVEVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDER
HHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHH
LTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQSTDTQDFDEKGNF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCC
PG
CC
>Mature Secondary Structure
MKVSADTPGHDDPGPGRRLGLDVGTVRIGVAASDRDAKLAMPVETVPRETGFKGPDLADI
CCCCCCCCCCCCCCCCCEECCEECEEEEEEEECCCCCEEECCHHHCCHHCCCCCCCHHHH
DRLVAIVEEYNAVEVIVGLPTDLQGNGSASVKHAKEIAFRVRRRLTNAGKNIPVRLGDER
HHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHH
LTTVVATQALRASGVSEKAGRKVIDQAAAVEILQTWLDARTRALEPQSTDTQDFDEKGNF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCC
PG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626