| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is dac [H]
Identifier: 62389972
GI number: 62389972
Start: 1132195
End: 1132899
Strand: Direct
Name: dac [H]
Synonym: cg1232
Alternate gene names: 62389972
Gene position: 1132195-1132899 (Clockwise)
Preceding gene: 62389971
Following gene: 62389975
Centisome position: 34.49
GC content: 54.75
Gene sequence:
>705_bases ATGAGTGCACTTGAGACATTGCAATGGCAGGACTGGTCAAGCGTCTTAATTGTGGTAGCTCACCCAGATGATCCGGAGTA TGGGCTTTCCGCGGCTGTTAAAGAATGGACAGACGCCGGGGTGGAGGTGTCTTACCTGCTGCTCACCCACGGGGAGGCAG GTATCCAAGGTTTAGACCCTAAAGAAACCGGGTCATTGCGCGCAGCGGAACAGCGGGCTGCATGTGATGTGGTAGGAGTT AGAAATCTCACCATTTTGAATCACCCAGATTCCATGTTGGTGTACAATCTGGTACTGCGCAAAGATATTGCTCGGGAAAT CCGGATCCGTAAACCAAATGCTGTGGTGGTATCCAATTTTGATGTAGAGGCCTACGGTGGTTTGAACCAGGCGGATCACC GCGTGGCGGGATTAGCCGCAATTGATGCGACCCGCGATGCCGCTAATCCGTGGGCGCAGCCAGAGCTGTTGCAGGAGGAT CTGCAGCCGTGGGGAGCTGAAGTCATCATCATTGCCGGACACCCAGAGCCCACCCACACCATGGATCTGGCTAAAGATTC TGTTGATGCCGGAGTTGCATCCCTTCAAGCTCACAAGGAATACTTGGCCGCTCTTCCAGATCCCCCGAAGCCGGAGGAGT TCATTCCGGCGTTTCTCGAGGTAGAGGGCGGTTACGCAGCGGCCTTCCGAGTTTTCGGACGGTAA
Upstream 100 bases:
>100_bases AGCTCCAAGAAAGTCAGTGCTGTGCATGGCTCGGTGCTGCTCATGCTTTTCGGTGTTTACATGATGAGCATGTTCGCCTG ATTTAGGTAGCCTGGTGGGA
Downstream 100 bases:
>100_bases GCAGGGCGATACGTGATAGGCAGCTTATCAATCAGATAAGACCACAAAGCCCACACTGCACACAGGAGTAATACTTCCGC GACGATGTAGAACGGCCATC
Product: hypothetical protein
Products: NA
Alternate protein names: N-acetylchitobiose deacetylase; Tk-Dac [H]
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MSALETLQWQDWSSVLIVVAHPDDPEYGLSAAVKEWTDAGVEVSYLLLTHGEAGIQGLDPKETGSLRAAEQRAACDVVGV RNLTILNHPDSMLVYNLVLRKDIAREIRIRKPNAVVVSNFDVEAYGGLNQADHRVAGLAAIDATRDAANPWAQPELLQED LQPWGAEVIIIAGHPEPTHTMDLAKDSVDAGVASLQAHKEYLAALPDPPKPEEFIPAFLEVEGGYAAAFRVFGR
Sequences:
>Translated_234_residues MSALETLQWQDWSSVLIVVAHPDDPEYGLSAAVKEWTDAGVEVSYLLLTHGEAGIQGLDPKETGSLRAAEQRAACDVVGV RNLTILNHPDSMLVYNLVLRKDIAREIRIRKPNAVVVSNFDVEAYGGLNQADHRVAGLAAIDATRDAANPWAQPELLQED LQPWGAEVIIIAGHPEPTHTMDLAKDSVDAGVASLQAHKEYLAALPDPPKPEEFIPAFLEVEGGYAAAFRVFGR >Mature_233_residues SALETLQWQDWSSVLIVVAHPDDPEYGLSAAVKEWTDAGVEVSYLLLTHGEAGIQGLDPKETGSLRAAEQRAACDVVGVR NLTILNHPDSMLVYNLVLRKDIAREIRIRKPNAVVVSNFDVEAYGGLNQADHRVAGLAAIDATRDAANPWAQPELLQEDL QPWGAEVIIIAGHPEPTHTMDLAKDSVDAGVASLQAHKEYLAALPDPPKPEEFIPAFLEVEGGYAAAFRVFGR
Specific function: Deacylates the non-reducing end of diacetylchitobiose (GlcNAc2). Can also use N-acetylglucosamine (GlcNAc) and N- acetylchitotriose (GlcNAc3). Probably involved in chitin degradation [H]
COG id: COG2120
COG function: function code S; Uncharacterized proteins, LmbE homologs
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PIGL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003737 [H]
Pfam domain/function: PF02585 PIG-L [H]
EC number: NA
Molecular weight: Translated: 25406; Mature: 25275
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALETLQWQDWSSVLIVVAHPDDPEYGLSAAVKEWTDAGVEVSYLLLTHGEAGIQGLDP CCCHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC KETGSLRAAEQRAACDVVGVRNLTILNHPDSMLVYNLVLRKDIAREIRIRKPNAVVVSNF CCCCCCHHHHHHHHEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHEECCCCEEEEECC DVEAYGGLNQADHRVAGLAAIDATRDAANPWAQPELLQEDLQPWGAEVIIIAGHPEPTHT CCCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCH MDLAKDSVDAGVASLQAHKEYLAALPDPPKPEEFIPAFLEVEGGYAAAFRVFGR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCEEEEEECCC >Mature Secondary Structure SALETLQWQDWSSVLIVVAHPDDPEYGLSAAVKEWTDAGVEVSYLLLTHGEAGIQGLDP CCHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC KETGSLRAAEQRAACDVVGVRNLTILNHPDSMLVYNLVLRKDIAREIRIRKPNAVVVSNF CCCCCCHHHHHHHHEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHEECCCCEEEEECC DVEAYGGLNQADHRVAGLAAIDATRDAANPWAQPELLQEDLQPWGAEVIIIAGHPEPTHT CCCCCCCCCCCCHHHHEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCH MDLAKDSVDAGVASLQAHKEYLAALPDPPKPEEFIPAFLEVEGGYAAAFRVFGR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA