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The map label for this gene is ripA

Identifier: 62389873

GI number: 62389873

Start: 1042395

End: 1043390

Strand: Direct

Name: ripA

Synonym: cg1120

Alternate gene names: 62389873

Gene position: 1042395-1043390 (Clockwise)

Preceding gene: 62389872

Following gene: 62389874

Centisome position: 31.75

GC content: 58.23

Gene sequence:

>996_bases
ATGAGTTCTGCCAGCTTGTTGTGGTGCCATTCCGGTGTGTCAACAGTTCGTTTTGGCGAGAGAATTTTCACTCTCGTCGC
AGGCGACCTGCTGTTCGCGCCTGAGGAAGCCCAGGTTGCCGATGATTCTCAAGGACTTGTTCTCAACATCCGCTTTGAGA
CCCTCAACATCATGGGACCTGCGCGTCGCATCCACCTGGGTCACGTGTGGAATGATCGCCTGACCTTTGAATACAGTCGC
TCGCTGTTCGGTAAAGAGACCCTGTCGCCAGACATCGCGCGCCTGTTCACCGACCGCGTTCCCACCCCTCCGCTGCCAGC
TCCGCGTAAAGCGCGCGCAGTGGCGCAGGTGCTGGTGTCCAACCCTGCGGATCAGACCAGTTTGGAAGAATTTGCGGAGA
TCCAAGGCGTTTCGGCGCGTACTTTGCAGCGCCAGTTCCTCAAATCCACGGGCTATTCATTCAGCGAATGGCGTGCTGCG
CAGCGCGTCTGCGTCGCCGCGAGCCTGCTGGCCCACGACTTCAGCATTTCAGTGGTTGCGAACCTCGTCGGGTTCGCCGC
GACCAGCAGCTTGACCAGAGCTTTTCGACGCCACACCGGTGCAACTCCGTCCACCTTTACTACTGGACAGATCGGCATGG
GCTCCGCAGGTCACCCACCACGCATCCCAGCAACCACCACGTTTGCCGAAGCGCATCAGGACCAGCAGCTGTGGATTTAC
AGCGGAACCGCAACCGTCACCACCCCCGGCTACTGCCGATTCATGGGACAAGGTGACATGGTGACCATCCCTGCCGGCAC
CCAAACCCGCATTGACGTGGCAGCCGGATCCATCGCATTCCCAGTCCCAGTTGGACTCGACGAATGGGGAATGGACCTAA
CCCGCGTCGTGGCTGTTAATAACCAGCAGCCAAAGCCACTGACCATTTTGGAACAGTCTGAATGGTCCAAGCTCAGCGAA
GAACTTCTGAACACTCCTGTACCTGTACAAATGTGA

Upstream 100 bases:

>100_bases
AGTCTCTTGCAATACTTCGCATCTGGAATGTAACATCATTTCGAAGATATGAGGTTAGCGTAACCTACATTGTGAAATTT
GCTTGTAGTGAGGATGAGAT

Downstream 100 bases:

>100_bases
AGGTAGTAAAGGTGTGAAAATAGTTCCTCACGTGGGGAACTATACTGATCCTTGATGCGTTAACTTGATTGACGACGAAA
AATCAATTGAAAGGATCGGG

Product: AraC-type DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSSASLLWCHSGVSTVRFGERIFTLVAGDLLFAPEEAQVADDSQGLVLNIRFETLNIMGPARRIHLGHVWNDRLTFEYSR
SLFGKETLSPDIARLFTDRVPTPPLPAPRKARAVAQVLVSNPADQTSLEEFAEIQGVSARTLQRQFLKSTGYSFSEWRAA
QRVCVAASLLAHDFSISVVANLVGFAATSSLTRAFRRHTGATPSTFTTGQIGMGSAGHPPRIPATTTFAEAHQDQQLWIY
SGTATVTTPGYCRFMGQGDMVTIPAGTQTRIDVAAGSIAFPVPVGLDEWGMDLTRVVAVNNQQPKPLTILEQSEWSKLSE
ELLNTPVPVQM

Sequences:

>Translated_331_residues
MSSASLLWCHSGVSTVRFGERIFTLVAGDLLFAPEEAQVADDSQGLVLNIRFETLNIMGPARRIHLGHVWNDRLTFEYSR
SLFGKETLSPDIARLFTDRVPTPPLPAPRKARAVAQVLVSNPADQTSLEEFAEIQGVSARTLQRQFLKSTGYSFSEWRAA
QRVCVAASLLAHDFSISVVANLVGFAATSSLTRAFRRHTGATPSTFTTGQIGMGSAGHPPRIPATTTFAEAHQDQQLWIY
SGTATVTTPGYCRFMGQGDMVTIPAGTQTRIDVAAGSIAFPVPVGLDEWGMDLTRVVAVNNQQPKPLTILEQSEWSKLSE
ELLNTPVPVQM
>Mature_330_residues
SSASLLWCHSGVSTVRFGERIFTLVAGDLLFAPEEAQVADDSQGLVLNIRFETLNIMGPARRIHLGHVWNDRLTFEYSRS
LFGKETLSPDIARLFTDRVPTPPLPAPRKARAVAQVLVSNPADQTSLEEFAEIQGVSARTLQRQFLKSTGYSFSEWRAAQ
RVCVAASLLAHDFSISVVANLVGFAATSSLTRAFRRHTGATPSTFTTGQIGMGSAGHPPRIPATTTFAEAHQDQQLWIYS
GTATVTTPGYCRFMGQGDMVTIPAGTQTRIDVAAGSIAFPVPVGLDEWGMDLTRVVAVNNQQPKPLTILEQSEWSKLSEE
LLNTPVPVQM

Specific function: Under iron limitation, represses the acn (aconitase), catA (catechol 1,2 dioxygenase), leuCD (isopropylmalate dehydratase), narKGHJI (nitrite/nitrate transporter and nitrate reductase), sdhCAB (succinate dehydrogenase), pta (phosphotransacetylase) and kat

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIPA_CORGL (Q8NRR3)

Other databases:

- EMBL:   BA000036
- EMBL:   BX927150
- EMBL:   AY513595
- RefSeq:   NP_600210.1
- RefSeq:   YP_225275.1
- ProteinModelPortal:   Q8NRR3
- SMR:   Q8NRR3
- GeneID:   1018972
- GeneID:   3343780
- GenomeReviews:   BA000036_GR
- GenomeReviews:   BX927147_GR
- KEGG:   cgb:cg1120
- KEGG:   cgl:NCgl0943
- HOGENOM:   HBG428997
- OMA:   TTPGYCR
- PhylomeDB:   Q8NRR3
- ProtClustDB:   CLSK633150
- BioCyc:   CGLU196627:CG1120-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710
- Gene3D:   G3DSA:1.10.10.60
- Gene3D:   G3DSA:2.60.120.10
- SMART:   SM00342

Pfam domain/function: PF00165 HTH_AraC; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 36045; Mature: 35914

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASLLWCHSGVSTVRFGERIFTLVAGDLLFAPEEAQVADDSQGLVLNIRFETLNIMGP
CCCCCEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEEEEEECCC
ARRIHLGHVWNDRLTFEYSRSLFGKETLSPDIARLFTDRVPTPPLPAPRKARAVAQVLVS
CEEEEEEEEECCCEEEEHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
NPADQTSLEEFAEIQGVSARTLQRQFLKSTGYSFSEWRAAQRVCVAASLLAHDFSISVVA
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
NLVGFAATSSLTRAFRRHTGATPSTFTTGQIGMGSAGHPPRIPATTTFAEAHQDQQLWIY
HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEE
SGTATVTTPGYCRFMGQGDMVTIPAGTQTRIDVAAGSIAFPVPVGLDEWGMDLTRVVAVN
ECCEEEECCCEEEEECCCCEEEECCCCCEEEEEECCCEEECCCCCCCHHCCCEEEEEEEC
NQQPKPLTILEQSEWSKLSEELLNTPVPVQM
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SSASLLWCHSGVSTVRFGERIFTLVAGDLLFAPEEAQVADDSQGLVLNIRFETLNIMGP
CCCCEEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEEEEEECCC
ARRIHLGHVWNDRLTFEYSRSLFGKETLSPDIARLFTDRVPTPPLPAPRKARAVAQVLVS
CEEEEEEEEECCCEEEEHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
NPADQTSLEEFAEIQGVSARTLQRQFLKSTGYSFSEWRAAQRVCVAASLLAHDFSISVVA
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
NLVGFAATSSLTRAFRRHTGATPSTFTTGQIGMGSAGHPPRIPATTTFAEAHQDQQLWIY
HHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEE
SGTATVTTPGYCRFMGQGDMVTIPAGTQTRIDVAAGSIAFPVPVGLDEWGMDLTRVVAVN
ECCEEEECCCEEEEECCCCEEEECCCCCEEEEEECCCEEECCCCCCCHHCCCEEEEEEEC
NQQPKPLTILEQSEWSKLSEELLNTPVPVQM
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626