Click here to switch to the map view.

The map label for this gene is ygaV [C]

Identifier: 62389760

GI number: 62389760

Start: 928398

End: 928712

Strand: Reverse

Name: ygaV [C]

Synonym: cg0993

Alternate gene names: 62389760

Gene position: 928712-928398 (Counterclockwise)

Preceding gene: 62389768

Following gene: 62389759

Centisome position: 28.29

GC content: 47.94

Gene sequence:

>315_bases
ATGTTGAGTTCCAAGGACTTGCCGATTTATCAGCGCAAAGCTGACCTTTTCAAGGGTTTGGCACATCCATACCGCATCAG
AGCCCTGGAAATCATTGCCACGAATAATGAAGTTTCAGTCGGTCAGATAACCAAAGAGATGGATTTGGAAGCCTCTCACG
TGTCCCAGCACCTTAAGGTTTTAAGGAAATTTGGACTGGTTTCCTCCCAACGCGAAGGCTTAGTTGTTTATTACCGGCTC
ACCTACCCGGAGGTCGCAGACTTTCTTAAGGTGAGCCGCTCACTATTAAAGAGGATGGCTGGCGAAGATGCGTGA

Upstream 100 bases:

>100_bases
GCTGTAACTAAAAATTGATTATGGAATATGTCTAGCCCAGGCCAAAATCTCCCGCGAGTTATATGATGGATCCGTCATCT
AGCCTAGTCACGGAGGAATA

Downstream 100 bases:

>100_bases
CCTTTTACCCTCTAGAGACGACTATCAGCTACTCCGCTTCTCCTGGAAGATGGACATTGCTGCTGGCGTCACCGTGGGCA
TTGTTGCCCTCCCCCTCGCT

Product: regulatory protein, arsR fam

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MLSSKDLPIYQRKADLFKGLAHPYRIRALEIIATNNEVSVGQITKEMDLEASHVSQHLKVLRKFGLVSSQREGLVVYYRL
TYPEVADFLKVSRSLLKRMAGEDA

Sequences:

>Translated_104_residues
MLSSKDLPIYQRKADLFKGLAHPYRIRALEIIATNNEVSVGQITKEMDLEASHVSQHLKVLRKFGLVSSQREGLVVYYRL
TYPEVADFLKVSRSLLKRMAGEDA
>Mature_104_residues
MLSSKDLPIYQRKADLFKGLAHPYRIRALEIIATNNEVSVGQITKEMDLEASHVSQHLKVLRKFGLVSSQREGLVVYYRL
TYPEVADFLKVSRSLLKRMAGEDA

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11850; Mature: 11850

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSKDLPIYQRKADLFKGLAHPYRIRALEIIATNNEVSVGQITKEMDLEASHVSQHLKV
CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHH
LRKFGLVSSQREGLVVYYRLTYPEVADFLKVSRSLLKRMAGEDA
HHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLSSKDLPIYQRKADLFKGLAHPYRIRALEIIATNNEVSVGQITKEMDLEASHVSQHLKV
CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHH
LRKFGLVSSQREGLVVYYRLTYPEVADFLKVSRSLLKRMAGEDA
HHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]