| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is dinB [C]
Identifier: 62389508
GI number: 62389508
Start: 630012
End: 631604
Strand: Direct
Name: dinB [C]
Synonym: cg0714
Alternate gene names: 62389508
Gene position: 630012-631604 (Clockwise)
Preceding gene: 62389507
Following gene: 62389510
Centisome position: 19.19
GC content: 60.14
Gene sequence:
>1593_bases ATGACGCGGGTGATGGCATTGTGGTTTCCGGATTGGCCTGTGCAGGCGGTTCATTTGGATGAAGATGCTCCCGCGCACAA TAAACCTGTGGCGATTGCTGCGCATTACCGCATCCAGGTGTGTGGCGTGGCTGCGCGCAAGCGTGGGGTGCGTCGTGGGA TGAAGGTTCGGCAGGCGCAGGCTGTGTGCCCTGAGCTGGAGGTTGTTGACGCGGATGCAGATCGTGATGCCCGGATGTTT GAGGGCATCGTGGCATCGCTCGGTGAGGTTGCCTCCAGCGTCGAGGTGCTTCGTCCGGGTCTGGTCGCGGTCGATGCGGG AGCTGCCGCGCGCTATTACGGTTCAGAGGACATCGCTGCTCAGATGCTTATCGACGCCGCCCTGCGCCAAGGCATCGACG TTTTCGCCGGGGTTGCGGATGAGATCACGACGGCCGTCATCGCGGCGAGGGCGAATGGTGGGACTGTGGTGAAGAGGGAG GCGTCGAGAAGCTTTTTACAGCAGCAACCCCTGGGCGTGCTGGCGGCCGAGGAAGCGCTGGGTTGTGAGGCGGAGGTGGT GCGCGCGCTGGCGGATCTGGGCATGCGCACGCTTGGTGAGCTGGCGGAACTGCCGGTAGAAGCCGTGGCGACGCGTTTCG GCAACGCTGGTCTGCGGTGTCACAACATTGCGCGTGCCAGGCACGATCGTAAGGTCGCGCCACCGATCACGCATGCAGAT TGGGAGGTTTCGCATGTGCCGGAGGAGCCTATTTTGCGTGTCGACGCCGCCTCGTTTGTTGCGCGCAACCTTGCCTCGCG CCTGCATCAACTGCTGAGCAAAGGTGGCGTGGTGTGCCAATTGCTCAAGGTCACAGCCGATTTCAGTACTGGTGATACGG TGAGCAGAATTTGGCGTACCGGTGAACCTTTAACGGAACAGGCAACTGCGGATCGGGTGCGTTGGCAGTTGGATGGGTGG TTGACTGCGCGCGGTGTGCATTCCGATGATCCGAATGAGCACGATGGGATTACGGCGTTGTGGCTTATTCCTTTGGAATG TGTGCCACCGGATATGGCCAGCGGCGGATTGTGGGATACCGGGCGCAGCCAGCAGCATGTGGCCAGACAAGTCATTGAGC GTGTGCAATCAAGCTTGGGCGTGGATGCGGTGCTGCAGCCTGTTCCGGCTGGTGGTCGGGGAGTAGAAGAACGCATTCAT TTTGTTCCCTATGGTGAAAAACGTGATGCTATCCGCAATCCAGCGGGGTCGTGGCCAGGGAAAATACCAGGTCCGCTGCC TGCTCGGTTGGGCGGTGGGATCAACCACCCGGCCTCGCAAGTGACCATGATTGATACAGAAGGGCAGCGTATTTACGTCA CCGCAGAGGCATTGCTCAGCTCGTCGCCGTATGCCTTGTCCTGGGGGCCGGCCCGCTATTTGATCACTGGCTGGGCTGGG CCATGGCCGGTGGATGATCGATGGTGGGAGAAAAACGGCACAAAATATGCCCGCCTCCAAGTGGTGGGACGGGCAGTATC TGAAGAAAGGCAGCTCAGTGCGTGGCTGTTGATGTGGAAAGACAACAAGTGGCGGATTGAGGCCACATATTAG
Upstream 100 bases:
>100_bases CGAAAACTCACGGTGTGCGCAGCGGAAAAGTCCTGATCAGTAGGCCTCAGGATGCAGCATTGCTTGAGCCTGAACAGCCA ACAACGTTGCGGGCGGTCCC
Downstream 100 bases:
>100_bases GAAACTACTGCGCTAAAACATCCACAACGAGACGGTGCGGATCCTGCAACTCAGTGACCGAGTAGCGGTGCTTGCCGTTG AGGCCGATGACGAACTGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: DNA Polymerase Involved In DNA Repair; DNA-Repair Protein; DNA Polymerase; UMUC Domain-Containing Protein DNA-Repair Protein; UMUC Domain Protein DNA-Repair Protein; DNA Repair Nucleotidyltransferase/DNA Polymerase; DNA Repair Polymerase
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MTRVMALWFPDWPVQAVHLDEDAPAHNKPVAIAAHYRIQVCGVAARKRGVRRGMKVRQAQAVCPELEVVDADADRDARMF EGIVASLGEVASSVEVLRPGLVAVDAGAAARYYGSEDIAAQMLIDAALRQGIDVFAGVADEITTAVIAARANGGTVVKRE ASRSFLQQQPLGVLAAEEALGCEAEVVRALADLGMRTLGELAELPVEAVATRFGNAGLRCHNIARARHDRKVAPPITHAD WEVSHVPEEPILRVDAASFVARNLASRLHQLLSKGGVVCQLLKVTADFSTGDTVSRIWRTGEPLTEQATADRVRWQLDGW LTARGVHSDDPNEHDGITALWLIPLECVPPDMASGGLWDTGRSQQHVARQVIERVQSSLGVDAVLQPVPAGGRGVEERIH FVPYGEKRDAIRNPAGSWPGKIPGPLPARLGGGINHPASQVTMIDTEGQRIYVTAEALLSSSPYALSWGPARYLITGWAG PWPVDDRWWEKNGTKYARLQVVGRAVSEERQLSAWLLMWKDNKWRIEATY
Sequences:
>Translated_530_residues MTRVMALWFPDWPVQAVHLDEDAPAHNKPVAIAAHYRIQVCGVAARKRGVRRGMKVRQAQAVCPELEVVDADADRDARMF EGIVASLGEVASSVEVLRPGLVAVDAGAAARYYGSEDIAAQMLIDAALRQGIDVFAGVADEITTAVIAARANGGTVVKRE ASRSFLQQQPLGVLAAEEALGCEAEVVRALADLGMRTLGELAELPVEAVATRFGNAGLRCHNIARARHDRKVAPPITHAD WEVSHVPEEPILRVDAASFVARNLASRLHQLLSKGGVVCQLLKVTADFSTGDTVSRIWRTGEPLTEQATADRVRWQLDGW LTARGVHSDDPNEHDGITALWLIPLECVPPDMASGGLWDTGRSQQHVARQVIERVQSSLGVDAVLQPVPAGGRGVEERIH FVPYGEKRDAIRNPAGSWPGKIPGPLPARLGGGINHPASQVTMIDTEGQRIYVTAEALLSSSPYALSWGPARYLITGWAG PWPVDDRWWEKNGTKYARLQVVGRAVSEERQLSAWLLMWKDNKWRIEATY >Mature_529_residues TRVMALWFPDWPVQAVHLDEDAPAHNKPVAIAAHYRIQVCGVAARKRGVRRGMKVRQAQAVCPELEVVDADADRDARMFE GIVASLGEVASSVEVLRPGLVAVDAGAAARYYGSEDIAAQMLIDAALRQGIDVFAGVADEITTAVIAARANGGTVVKREA SRSFLQQQPLGVLAAEEALGCEAEVVRALADLGMRTLGELAELPVEAVATRFGNAGLRCHNIARARHDRKVAPPITHADW EVSHVPEEPILRVDAASFVARNLASRLHQLLSKGGVVCQLLKVTADFSTGDTVSRIWRTGEPLTEQATADRVRWQLDGWL TARGVHSDDPNEHDGITALWLIPLECVPPDMASGGLWDTGRSQQHVARQVIERVQSSLGVDAVLQPVPAGGRGVEERIHF VPYGEKRDAIRNPAGSWPGKIPGPLPARLGGGINHPASQVTMIDTEGQRIYVTAEALLSSSPYALSWGPARYLITGWAGP WPVDDRWWEKNGTKYARLQVVGRAVSEERQLSAWLLMWKDNKWRIEATY
Specific function: Poorly Processive, Error-Prone DNA Polymerase Involved In Untargeted Mutagenesis. Copies Undamaged DNA At Stalled Replication Forks, Which Arise In Vivo From Mismatched Or Misaligned Primer Ends. These Misaligned Primers Can Be Extended By Poliv. Exhibits
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7 [C]
Molecular weight: Translated: 57731; Mature: 57600
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS50173 UMUC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRVMALWFPDWPVQAVHLDEDAPAHNKPVAIAAHYRIQVCGVAARKRGVRRGMKVRQAQ CCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHH AVCPELEVVDADADRDARMFEGIVASLGEVASSVEVLRPGLVAVDAGAAARYYGSEDIAA HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHH QMLIDAALRQGIDVFAGVADEITTAVIAARANGGTVVKREASRSFLQQQPLGVLAAEEAL HHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCEEEEEHHHHHHHHHCCCCEEEHHHHC GCEAEVVRALADLGMRTLGELAELPVEAVATRFGNAGLRCHNIARARHDRKVAPPITHAD CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC WEVSHVPEEPILRVDAASFVARNLASRLHQLLSKGGVVCQLLKVTADFSTGDTVSRIWRT CEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCHHHHHHHHC GEPLTEQATADRVRWQLDGWLTARGVHSDDPNEHDGITALWLIPLECVPPDMASGGLWDT CCCHHHHHHHHHHEEEECCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC GRSQQHVARQVIERVQSSLGVDAVLQPVPAGGRGVEERIHFVPYGEKRDAIRNPAGSWPG CCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHCEEECCCCCCHHHHCCCCCCCCC KIPGPLPARLGGGINHPASQVTMIDTEGQRIYVTAEALLSSSPYALSWGPARYLITGWAG CCCCCCCHHHCCCCCCCCCEEEEEECCCCEEEEEHHHHHCCCCCEEECCCCEEEEEECCC PWPVDDRWWEKNGTKYARLQVVGRAVSEERQLSAWLLMWKDNKWRIEATY CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCEEEEEEEECCEEEEEECC >Mature Secondary Structure TRVMALWFPDWPVQAVHLDEDAPAHNKPVAIAAHYRIQVCGVAARKRGVRRGMKVRQAQ CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHH AVCPELEVVDADADRDARMFEGIVASLGEVASSVEVLRPGLVAVDAGAAARYYGSEDIAA HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHH QMLIDAALRQGIDVFAGVADEITTAVIAARANGGTVVKREASRSFLQQQPLGVLAAEEAL HHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCEEEEEHHHHHHHHHCCCCEEEHHHHC GCEAEVVRALADLGMRTLGELAELPVEAVATRFGNAGLRCHNIARARHDRKVAPPITHAD CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC WEVSHVPEEPILRVDAASFVARNLASRLHQLLSKGGVVCQLLKVTADFSTGDTVSRIWRT CEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCHHHHHHHHC GEPLTEQATADRVRWQLDGWLTARGVHSDDPNEHDGITALWLIPLECVPPDMASGGLWDT CCCHHHHHHHHHHEEEECCEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC GRSQQHVARQVIERVQSSLGVDAVLQPVPAGGRGVEERIHFVPYGEKRDAIRNPAGSWPG CCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHCEEECCCCCCHHHHCCCCCCCCC KIPGPLPARLGGGINHPASQVTMIDTEGQRIYVTAEALLSSSPYALSWGPARYLITGWAG CCCCCCCHHHCCCCCCCCCEEEEEECCCCEEEEEHHHHHCCCCCEEECCCCEEEEEECCC PWPVDDRWWEKNGTKYARLQVVGRAVSEERQLSAWLLMWKDNKWRIEATY CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCEEEEEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA