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The map label for this gene is rutC [H]

Identifier: 62389046

GI number: 62389046

Start: 162440

End: 162871

Strand: Direct

Name: rutC [H]

Synonym: cg0191

Alternate gene names: 62389046

Gene position: 162440-162871 (Clockwise)

Preceding gene: 62389044

Following gene: 62389047

Centisome position: 4.95

GC content: 53.01

Gene sequence:

>432_bases
ATGAGTGAAACCCAGTCGAATTCAGTGTCAGCGGTAATGCCTGCGCAGCTCCCTCCAGGGCCTGCCGAGCGTACTGTGTA
CTCCTACGGTGTTCGCGCAGGGGATCAGTTGCACATTTCAGGAATGGTGGCTTTTGATTCTGACGCGAATATTGTCGGCG
AAGGGGACATTGAGGCGCAGGCTGAACAAGTCTTTAAGAACCTGCAAGCAGTAGTCGAGGAGGCAGGAGGAACGATCAAC
AACATTGTTTCCACCACTACTTATCTTGCCGATGTCACCGATGCTCCCGTTGTTAACGCTGCTCGCTCCCGCTATTTCAC
CGGAGAAGTATTGCCCACCCACACCGTAATTGGAGTTGCTGCTCTTGCTCGGCCACAGTTTCTAGTCGAGATCTCAGCGG
TGGCCTATTTGGGGGACCTTTCAAAAGACTAG

Upstream 100 bases:

>100_bases
GGGTGAGATTGGAATGATTTCGGCCCGGGCGCTCGAAAACCGTGATAGACACAATGAACCGAGCAAATCCGCCAGGAAAT
AAATTAAGTAAGGAATATCC

Downstream 100 bases:

>100_bases
ATACATGATTATTTTTGCATTAACCCCAGGTAGGGGCATTGTCGCAAAGCCCAACTACAGCAAGGTGCGTACGCTGGTGG
CCAACTGAATACGTTTGAGG

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSETQSNSVSAVMPAQLPPGPAERTVYSYGVRAGDQLHISGMVAFDSDANIVGEGDIEAQAEQVFKNLQAVVEEAGGTIN
NIVSTTTYLADVTDAPVVNAARSRYFTGEVLPTHTVIGVAALARPQFLVEISAVAYLGDLSKD

Sequences:

>Translated_143_residues
MSETQSNSVSAVMPAQLPPGPAERTVYSYGVRAGDQLHISGMVAFDSDANIVGEGDIEAQAEQVFKNLQAVVEEAGGTIN
NIVSTTTYLADVTDAPVVNAARSRYFTGEVLPTHTVIGVAALARPQFLVEISAVAYLGDLSKD
>Mature_142_residues
SETQSNSVSAVMPAQLPPGPAERTVYSYGVRAGDQLHISGMVAFDSDANIVGEGDIEAQAEQVFKNLQAVVEEAGGTINN
IVSTTTYLADVTDAPVVNAARSRYFTGEVLPTHTVIGVAALARPQFLVEISAVAYLGDLSKD

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71982068, Length=116, Percent_Identity=37.0689655172414, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=116, Percent_Identity=37.0689655172414, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=116, Percent_Identity=37.0689655172414, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15014; Mature: 14883

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETQSNSVSAVMPAQLPPGPAERTVYSYGVRAGDQLHISGMVAFDSDANIVGEGDIEAQ
CCCCCCCCEEEEECCCCCCCCCHHHEEECCCCCCCEEEEEEEEEECCCCCEEECCCCHHH
AEQVFKNLQAVVEEAGGTINNIVSTTTYLADVTDAPVVNAARSRYFTGEVLPTHTVIGVA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCEECCCCCCHHHHHHHH
ALARPQFLVEISAVAYLGDLSKD
HHCCCHHEEHHHHHHHHHCCCCC
>Mature Secondary Structure 
SETQSNSVSAVMPAQLPPGPAERTVYSYGVRAGDQLHISGMVAFDSDANIVGEGDIEAQ
CCCCCCCEEEEECCCCCCCCCHHHEEECCCCCCCEEEEEEEEEECCCCCEEECCCCHHH
AEQVFKNLQAVVEEAGGTINNIVSTTTYLADVTDAPVVNAARSRYFTGEVLPTHTVIGVA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCEECCCCCCHHHHHHHH
ALARPQFLVEISAVAYLGDLSKD
HHCCCHHEEHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA