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The map label for this gene is recF [H]

Identifier: 62388896

GI number: 62388896

Start: 3585

End: 4769

Strand: Direct

Name: recF [H]

Synonym: cg0005

Alternate gene names: 62388896

Gene position: 3585-4769 (Clockwise)

Preceding gene: 62388895

Following gene: 161486724

Centisome position: 0.11

GC content: 55.7

Gene sequence:

>1185_bases
ATGCACATCCGTTCTTTGGAATTACGTGATTACCGTTCCTGGCCTGAACTCAAAGTGGATTTGGAACCTGGAATTACAGT
TTTTATCGGCCGCAACGGTTTTGGTAAAACCAACATCGTCGAGGCCATCGGCTATCTTGCGCATTTGTCATCGCATCGGG
TGTCCTCTGATGCGCCATTGGTGCGGGCGCACGCTGAAAACGCCCGAGTTTCGGCGGTTGCTGTTAATCAAGGCCGAGAA
TTGGCAGCTCACTTGCTGATCAAACCCCATGCTGCGAATCAGGCAAGTTTGAATCGCACAAAAGTCAGGACTCCCCGGGA
GCTGCTTGGTGTGGTGAAAACGGTGCTGTTTGCGCCGGAAGATTTGGCATTAGTCAAAGGCGAGCCAGCAGAACGTCGCC
GCTATTTAGATGACATTATTGCCACTCGCCAGCCTCGGATGGCGGGGGTCAAGGCCGACTACGACAAGGTGCTGAAACAA
AGGAACGCCCTGCTCAAGACCGCCACCATTGCGCTTCGTCGAGGTTACGGCACCGAGGAAGGCGCAGCTGCGCTGAGTAC
TTTGGATACCTGGGATGGCCAGTTGGCACGCCTGGGTGCTGAAGTGATGGCAGCCAGATTTGCCCTGCTCAATGAGTTGG
GGCCGAAAATCTATGAGGCTTACACCACGATCGCCCCGGAATCCCGGCCAGCTGCGGTGAATTACAAAACCACCATCGAT
CAAGGCCTGTCGCAGTTTTCCGAATTCGATGCCGGCATCATCGAAGCCACGCTGCTGACAGAATTGGCAGCGAAACGTCA
ACGAGAAATCGAACGCGGCTCAAGCCTGGTCGGCCCCCACCGCGATGATGTCGATTTAATGCTCGGCGATCAGCCCGCCA
AAGGCTTTGCCAGCCACGGCGAGACCTGGTCTTTCGCGCTTTCACTGCGAATTGCAGAATTTAACCTGCTGAAATCCGAT
GGCACCGACCCGATCCTCATCTTGGATGATGTGTTTTCCGAGCTCGACGCCGGCCGTCGCGAAAAACTCGTGGGCATAGC
GCAAGAGGTGGAACAGGTGCTCATCACCGCTGCAGTCCACGACGATCTGCCGGAGAATCTCAAGAAAGTGCTCACTGCGC
AGCACACCGTCACCGTCCAAGACACCGGCACCGGGCGGATTTCACTCCTGGATGTGCAACCATGA

Upstream 100 bases:

>100_bases
GTTTCACCCTTTTCGCGCCTGACTTTGTACACTTTTCAACCGACAAAGTCAGGCGCGTTATCCAATCCACTTCCCACCGA
CTAAAAGGAGGTCAGACCCG

Downstream 100 bases:

>100_bases
CAGATCCAATTGAGCAGGCATTTGAACGCATCCGCGCCGAAGCCATGCGCAGAAATGGATCCGTTCCCGACCTCAATAAA
AACGATGCTTTTCGACGCCC

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPLVRAHAENARVSAVAVNQGRE
LAAHLLIKPHAANQASLNRTKVRTPRELLGVVKTVLFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQ
RNALLKTATIALRRGYGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNYKTTID
QGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAKGFASHGETWSFALSLRIAEFNLLKSD
GTDPILILDDVFSELDAGRREKLVGIAQEVEQVLITAAVHDDLPENLKKVLTAQHTVTVQDTGTGRISLLDVQP

Sequences:

>Translated_394_residues
MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPLVRAHAENARVSAVAVNQGRE
LAAHLLIKPHAANQASLNRTKVRTPRELLGVVKTVLFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQ
RNALLKTATIALRRGYGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNYKTTID
QGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAKGFASHGETWSFALSLRIAEFNLLKSD
GTDPILILDDVFSELDAGRREKLVGIAQEVEQVLITAAVHDDLPENLKKVLTAQHTVTVQDTGTGRISLLDVQP
>Mature_394_residues
MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPLVRAHAENARVSAVAVNQGRE
LAAHLLIKPHAANQASLNRTKVRTPRELLGVVKTVLFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQ
RNALLKTATIALRRGYGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNYKTTID
QGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAKGFASHGETWSFALSLRIAEFNLLKSD
GTDPILILDDVFSELDAGRREKLVGIAQEVEQVLITAAVHDDLPENLKKVLTAQHTVTVQDTGTGRISLLDVQP

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=393, Percent_Identity=24.9363867684478, Blast_Score=95, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 43186; Mature: 43186

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL
CCCCCCCHHHCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
VRAHAENARVSAVAVNQGRELAAHLLIKPHAANQASLNRTKVRTPRELLGVVKTVLFAPE
EEECCCCCEEEEEEECCCHHHHHHHEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCC
DLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRGYGTEE
CCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
GAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNYKTTID
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEEHHHHH
QGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAKGFASHG
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHCCC
ETWSFALSLRIAEFNLLKSDGTDPILILDDVFSELDAGRREKLVGIAQEVEQVLITAAVH
CCEEEEEEEEEEEEEEECCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
DDLPENLKKVLTAQHTVTVQDTGTGRISLLDVQP
HCCHHHHHHHHHHCEEEEEEECCCCEEEEEECCC
>Mature Secondary Structure
MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL
CCCCCCCHHHCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
VRAHAENARVSAVAVNQGRELAAHLLIKPHAANQASLNRTKVRTPRELLGVVKTVLFAPE
EEECCCCCEEEEEEECCCHHHHHHHEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCC
DLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRGYGTEE
CCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
GAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNYKTTID
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEEHHHHH
QGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAKGFASHG
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHCCC
ETWSFALSLRIAEFNLLKSDGTDPILILDDVFSELDAGRREKLVGIAQEVEQVLITAAVH
CCEEEEEEEEEEEEEEECCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
DDLPENLKKVLTAQHTVTVQDTGTGRISLLDVQP
HCCHHHHHHHHHHCEEEEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA