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The map label for this gene is sodA [H]

Identifier: 62184967

GI number: 62184967

Start: 390444

End: 391067

Strand: Direct

Name: sodA [H]

Synonym: CAB337

Alternate gene names: 62184967

Gene position: 390444-391067 (Clockwise)

Preceding gene: 62184966

Following gene: 62184968

Centisome position: 34.12

GC content: 40.06

Gene sequence:

>624_bases
ATGACCTTTGTTCCCTATACTTTGCCCCCATTGCCCTATGATTATTCTGCTCTAGAGCCAGTAATTAGTGCTGAGATTAT
GCATCTACATCATCAAAAGCATCATCAAGGTTATATAAATAATTTGAATGAAGCTTTGAAGAAGTTAGATCTAGCTGATG
TACAACAAGACCTTACGCAGTTGATTGCTTTAGAGCCTACTATACGATTTAATGGGGGAGGGCATATTAACCACTCCTTA
TTTTGGGAAATGCTCGCTCCGATAGGTCAAGGTGGAGGCGTCCCTCCTAAGCACGGCTTACTTAAGCTTATTGAGAAATT
CTGGGGAACTTTTGACAACTTTTTAAAAGAATTTATTAAATTTGCCGCCCCGATTCAGGGTTCCGGGTGGGCTTGGCTAG
GTTTTTGTCTCGAAAAACAAGAACTTACGCTACACGCGACAGTAAACCAGGATCCTCTCGAAGCCACCACAGGTAAGGTG
CCTCTTCTCGGAGTCGACGTCTGGGAGCATGCGTATTACCTCCAATATAAAAATGTTAGATTAGATTACTTAAAAGCAAT
TCCTCAAGTAATTAATTGGGGATATATTGAAAAAAGATTTTCTGAGATAACTAAAGATAACTAA

Upstream 100 bases:

>100_bases
TAATATCTTCAGCGCATCTACACTGGCCTACATCGATGAAAAAGAATATCACTAAACAATGTTCTTGATATAACTCAAGA
CAGATATAAAGGACTTTCTT

Downstream 100 bases:

>100_bases
TTAAAAGAGTATTTTTAATTGAAGAGTTAATAACTTTAATTTAAAATTACTTAAGCTAAAAAAATTGGATTAGGTAGCTT
GTGCGTTTATTTTCTTACGA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTFVPYTLPPLPYDYSALEPVISAEIMHLHHQKHHQGYINNLNEALKKLDLADVQQDLTQLIALEPTIRFNGGGHINHSL
FWEMLAPIGQGGGVPPKHGLLKLIEKFWGTFDNFLKEFIKFAAPIQGSGWAWLGFCLEKQELTLHATVNQDPLEATTGKV
PLLGVDVWEHAYYLQYKNVRLDYLKAIPQVINWGYIEKRFSEITKDN

Sequences:

>Translated_207_residues
MTFVPYTLPPLPYDYSALEPVISAEIMHLHHQKHHQGYINNLNEALKKLDLADVQQDLTQLIALEPTIRFNGGGHINHSL
FWEMLAPIGQGGGVPPKHGLLKLIEKFWGTFDNFLKEFIKFAAPIQGSGWAWLGFCLEKQELTLHATVNQDPLEATTGKV
PLLGVDVWEHAYYLQYKNVRLDYLKAIPQVINWGYIEKRFSEITKDN
>Mature_206_residues
TFVPYTLPPLPYDYSALEPVISAEIMHLHHQKHHQGYINNLNEALKKLDLADVQQDLTQLIALEPTIRFNGGGHINHSLF
WEMLAPIGQGGGVPPKHGLLKLIEKFWGTFDNFLKEFIKFAAPIQGSGWAWLGFCLEKQELTLHATVNQDPLEATTGKVP
LLGVDVWEHAYYLQYKNVRLDYLKAIPQVINWGYIEKRFSEITKDN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=55, Blast_Score=226, Evalue=9e-60,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=55, Blast_Score=226, Evalue=9e-60,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=44, Blast_Score=162, Evalue=2e-40,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=45.2380952380952, Blast_Score=159, Evalue=8e-41,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=35.1758793969849, Blast_Score=120, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=53.8071065989848, Blast_Score=220, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17569479, Length=196, Percent_Identity=53.5714285714286, Blast_Score=213, Evalue=4e-56,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=44.5544554455446, Blast_Score=166, Evalue=2e-42,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=55, Blast_Score=230, Evalue=6e-61,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23648; Mature: 23517

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVPYTLPPLPYDYSALEPVISAEIMHLHHQKHHQGYINNLNEALKKLDLADVQQDLTQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LIALEPTIRFNGGGHINHSLFWEMLAPIGQGGGVPPKHGLLKLIEKFWGTFDNFLKEFIK
HHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FAAPIQGSGWAWLGFCLEKQELTLHATVNQDPLEATTGKVPLLGVDVWEHAYYLQYKNVR
HHCCCCCCCCEEEHEEECCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHEEECCCH
LDYLKAIPQVINWGYIEKRFSEITKDN
HHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TFVPYTLPPLPYDYSALEPVISAEIMHLHHQKHHQGYINNLNEALKKLDLADVQQDLTQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LIALEPTIRFNGGGHINHSLFWEMLAPIGQGGGVPPKHGLLKLIEKFWGTFDNFLKEFIK
HHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FAAPIQGSGWAWLGFCLEKQELTLHATVNQDPLEATTGKVPLLGVDVWEHAYYLQYKNVR
HHCCCCCCCCEEEHEEECCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHEEECCCH
LDYLKAIPQVINWGYIEKRFSEITKDN
HHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]