Click here to switch to the map view.

The map label for this gene is ylbH [H]

Identifier: 62184779

GI number: 62184779

Start: 142364

End: 142927

Strand: Direct

Name: ylbH [H]

Synonym: CAB134

Alternate gene names: 62184779

Gene position: 142364-142927 (Clockwise)

Preceding gene: 62184778

Following gene: 62184780

Centisome position: 12.44

GC content: 41.13

Gene sequence:

>564_bases
TTGAAAATTCTTGCTGGCAAATACAAAGGAAAGTCTTTAAAAACTTTCTCTAATCCTTCAGTCCGTCCTACTTGTGGCGT
GGTCAAAGAGGCCGTGTTTAACATCTGTTCTGTCTATGTTGAGGACGCGAGATTTTTAGATCTTTTTGCTGGAGTGGGAT
CTGTGGGGTTTGAAGCCTTAAGTCGCGGAGCTGCTTCAGTAACTTTCGTAGATTCTTCTGCACAATCTGTCCGATTAATT
CGGGCAAATAGCCAACTTTTGCACCCGAATTTGCCAATTACAATTATCAAACAAGAGGCAAGGTCAGCAATTCAACGGTT
GGCCAAAAAGAACATGTCGTTTGACCTCATTTACATAGATCCTCCCTATAATCTTGAAGATAGCTATCTTGCCGCCGTAT
TGCGTGATATCGTGGTCGGTGGGATTTTAGATAAACACGGGTGCTTATTTTTAGAAAATGCTTCTATGGAACCCATCCTT
GTTGAAGGTCTAATACGAAAACGTAGTAGGAAACTGGGAGGCACATGTTTATCAGAATATGTTTTCGAAGACAGTTCTAA
TTAG

Upstream 100 bases:

>100_bases
ATAAAGTGCGAGCCCCCTTAGAGGGATTCGGACACATTCGTACTATAGAATATAGATTAGTGGCCGCTGATTATATAGAT
TTTATTCCCCAGGTTATAAT

Downstream 100 bases:

>100_bases
GATAGTGAAAATTTCTCCATAAAATTCTTAACATTAAACAGCTAGTATGTTTTCTGTTTTGATAAACAGGTTTTTTAGCC
CTTAAGCCATTCTTTCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNICSVYVEDARFLDLFAGVGSVGFEALSRGAASVTFVDSSAQSVRLI
RANSQLLHPNLPITIIKQEARSAIQRLAKKNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDKHGCLFLENASMEPIL
VEGLIRKRSRKLGGTCLSEYVFEDSSN

Sequences:

>Translated_187_residues
MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNICSVYVEDARFLDLFAGVGSVGFEALSRGAASVTFVDSSAQSVRLI
RANSQLLHPNLPITIIKQEARSAIQRLAKKNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDKHGCLFLENASMEPIL
VEGLIRKRSRKLGGTCLSEYVFEDSSN
>Mature_187_residues
MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNICSVYVEDARFLDLFAGVGSVGFEALSRGAASVTFVDSSAQSVRLI
RANSQLLHPNLPITIIKQEARSAIQRLAKKNMSFDLIYIDPPYNLEDSYLAAVLRDIVVGGILDKHGCLFLENASMEPIL
VEGLIRKRSRKLGGTCLSEYVFEDSSN

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=127, Percent_Identity=36.2204724409449, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20492; Mature: 20492

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNICSVYVEDARFLDLFAGVGSVGFEAL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SRGAASVTFVDSSAQSVRLIRANSQLLHPNLPITIIKQEARSAIQRLAKKNMSFDLIYID
HCCCCEEEEECCCCCEEEEEECCCCEECCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEC
PPYNLEDSYLAAVLRDIVVGGILDKHGCLFLENASMEPILVEGLIRKRSRKLGGTCLSEY
CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHH
VFEDSSN
HHCCCCC
>Mature Secondary Structure
MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNICSVYVEDARFLDLFAGVGSVGFEAL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SRGAASVTFVDSSAQSVRLIRANSQLLHPNLPITIIKQEARSAIQRLAKKNMSFDLIYID
HCCCCEEEEECCCCCEEEEEECCCCEECCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEEC
PPYNLEDSYLAAVLRDIVVGGILDKHGCLFLENASMEPILVEGLIRKRSRKLGGTCLSEY
CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHH
VFEDSSN
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]