| Definition | Bacteroides fragilis NCTC 9343 chromosome, complete genome. |
|---|---|
| Accession | NC_003228 |
| Length | 5,205,140 |
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The map label for this gene is hsdR
Identifier: 60681327
GI number:
Start: 2141547
End: 2144312
Strand: Direct
Name: hsdR
Synonym: BF1836
Alternate gene names: NA
Gene position: NA
Preceding gene: 60681326
Following gene: 60681328
Centisome position: NA
GC content: NA
Gene sequence:
>2766_bases ATGACAATACAGTCAGAACAAGCATTAGAGCAAGGTTTGATAAAAACACTAGTCTCTATGAATTATCAGAAGATTGAAAT AGCAGATGAAAATGCTCTGATTGTCAATTTTCGTAATCAACTTAATATACATAACAATATCGAGCTTACCGATGATGAGT TTAATCGAATAATGATTCATTTGGACAGTGGCTCAATATTCGTAAAAGCAGAAAAACTTCGTAATCGCTTCCCACTCACT CGTGATGATGAGTCGGTAAAGTGGATTGAGTTCCTAAACACACAAGAGTGGTGTAAGAATGAATTTCAGGTTTCCAATCA GATTACCGATGAGGGTAGACGTAAATGTAGGTATGATGTTACGATTTTGGTTAATGGACTACCGCTGGTACAAGTGGAGC TGAAAAAACGTGGTGTAGAACTTAAACAGGCATACAGCCAAGTTCAACGCTACCACAAAACAGCATTCAAGGGACTATTT AACTATATTCAGATATTTGTCATCTCAAACGGTGTAAACACTCGCTACTTCGCCAATAATCCAAATCAAGGATATAAGTT TACATTCCCTTGGGCAGATTTCAAAAACAACCATATTGACAGATTAGATCTCTTTGCTGCGATGTTTTTTGAACAATGTA CACTGGGGAAAATGCTTGCCAAATATGTTGTGTTGCACCAATCAGACAAGTGCCTGATGATTCTCAGACCGTATCAATTT TATGCAGTTGAGGCTTTGCTTGACAAGGTTGCTAACTCTGTCAAGAACGGATATATTTGGCACACTACAGGCAGTGGTAA GACGCTTACATCCTTTAAAGCGGCTCAACTAATAGCCGAAATGAGTGATATTGATAAAGTGCTATTTGTTGTTGACAGGC ACGATTTGGATACCCAAACCAAGAAAGAGTATGATGCTTTTGCTCCGGGAGCAGTGGATAGTACCGACAATACAAAAGAG TTGGTGAAGGCATTGCAGGGCAAGAAAAAACTGATGATTACTACAATTCAAAAACTGAATAACGCAGTTCAGAAAGATAG ATACAGTAAAGGCTTACAAGGGGTAAAAGATAAAAATATTGTAATGATATTTGATGAGTGTCACCGCAGCCAGTTCGGAG AAATGCATTCTAATATAACAGGCTTTTTTAGCAAAATCCGCTACTTTGGATTTACAGGAACCCCCATTTTTGCGGACAAT GCCAACAATGGTTGCACAACAAAAGATATTTTTGGTGAAAGACTTCACGAATATCTAATCAAAGATGCTATTGCAGATGA AAACGTACTCGGATTCTTGGTGGAGTATCATGGCAAATGGAAACGAAAAAGTGAAAACGACAAACAGGTTAAATCTATTG ATACAGCAGAAGTACTATTGAAGGATGAAAGGATAGCCTCAATAACCGATTTTATACTTTCCAACTATAACTCTTCGACA TACGAAAGAGATTTCAATGCGATGTTGGCAGTTGGTGGAGTTAAAATGCTCATTAAATATTACGATATGTTTAAGAGTCG CAACCACGACTTAAAGATTGCTACGATCTTCACATATACTCAAAATGAAGAATCAGAGGACGAATTTACAGGTTTAGGGC AAGGATTTGTTTCTGTTCAAAACACCCGAGATATTTTAGAGAGCTATATCAAAGATTACAACGAGACATTTGGGACGGAA TTTGACACAGACCATTTCGGGCTATACTACGATGATATCAATAAGCGAATGAAAAACCGTCAAATCGACCTCTTGATAGT CTCCGATATGTTTCTTACGGGGTTCGATGCTAAGAAACTCAATACACTTTACGTCGACAAAAACCTCAACTATCACGGTC TATTACAAGCATTTTCACGAACAAATCGCGTGCTGAATGAGAAGAAAAAATTTGGTAAAATCACTTGTTTCAGAGACCTT AAACAACAGACGGACGATGCAATAAAACTTTACTCCAATAACAAATCGTCAGAGGTAGTCTTAATGAAACCTTACGAAAA ACTTGTTGAGCGATTCAATGAGATGGCAGCCGAATTTTTATCCTATTTCCCTACGGTAAAAAGCGTTGGCAACTTAGAAT CAGAGTTAGACAAACGCCGCTTTGTCATTCTCTTCAGAGCAATGCTAAGACTAAGAAATGAGGTGAAGGGATATAATGAA TTTGATGCAGAAGATCTTACAATTGAAGAACAACGATTTGCGGACTATCAAAGCAAATACCTTGATATGTCCAATGAGTT TGCTATTACCTCGGAAAAGGAAGATGCCGAAAGTATTCTGCAAGATATAGATTTTGAGTTAGAATTAGTGCACCGAGATA TTATCAATGTGATGTATATTCTTGCTCTGCTTCAAGACCTCAAGCCGGAGTCTTCATCATATCCAAAAGACAGGAAAGCG GTTCTTGACACAATGGACTCCAACCCTGAACTGCGTTCTAAGATTGCCCTAATCGACAACTTTATCAAGTTGCATATTGA CGGACGGCAAAGCAATGATTTACCTGCTGATATGGAGAGCGATTTGGATAAATACATTGCCACTCAAAAGGCTATTGCCA TAGAGCAAGTTGCCACAGAGGAGGGGATTGATAGTACCCTATTGCACGAATATATTTCTGAATATGAGTATTTAGGGAAA CCTAAAAACGAAATTATCAAACGAGCCATTGATCCGCTTAAATTATCATTTATGGATGCTCAATCCAAAAAAAAGAGTCT AATCGACAAAATGAAAGATATTATTAAACTGTTTAGCTGGAATTAA
Upstream 100 bases:
>100_bases GTTCTAATAAGATTCAACCTTCTATAGAGACGTTAGATGAAATAGCTATTCTGCTAAATGTAGATGTGCGAGAATTATTA AATAAAAGTAAATTGAAAGT
Downstream 100 bases:
>100_bases AAATATGAAATTACCGGAGCCGCAATCATCTACTTTTTCAGGCTTAATTAGCGATATTGAAAAAGGCCAAATTAAAATCC CTCAGTTTCAACGAGAATTT
Product: putative type I restriction enzyme R protein
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>921_residues MTIQSEQALEQGLIKTLVSMNYQKIEIADENALIVNFRNQLNIHNNIELTDDEFNRIMIHLDSGSIFVKAEKLRNRFPLT RDDESVKWIEFLNTQEWCKNEFQVSNQITDEGRRKCRYDVTILVNGLPLVQVELKKRGVELKQAYSQVQRYHKTAFKGLF NYIQIFVISNGVNTRYFANNPNQGYKFTFPWADFKNNHIDRLDLFAAMFFEQCTLGKMLAKYVVLHQSDKCLMILRPYQF YAVEALLDKVANSVKNGYIWHTTGSGKTLTSFKAAQLIAEMSDIDKVLFVVDRHDLDTQTKKEYDAFAPGAVDSTDNTKE LVKALQGKKKLMITTIQKLNNAVQKDRYSKGLQGVKDKNIVMIFDECHRSQFGEMHSNITGFFSKIRYFGFTGTPIFADN ANNGCTTKDIFGERLHEYLIKDAIADENVLGFLVEYHGKWKRKSENDKQVKSIDTAEVLLKDERIASITDFILSNYNSST YERDFNAMLAVGGVKMLIKYYDMFKSRNHDLKIATIFTYTQNEESEDEFTGLGQGFVSVQNTRDILESYIKDYNETFGTE FDTDHFGLYYDDINKRMKNRQIDLLIVSDMFLTGFDAKKLNTLYVDKNLNYHGLLQAFSRTNRVLNEKKKFGKITCFRDL KQQTDDAIKLYSNNKSSEVVLMKPYEKLVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNE FDAEDLTIEEQRFADYQSKYLDMSNEFAITSEKEDAESILQDIDFELELVHRDIINVMYILALLQDLKPESSSYPKDRKA VLDTMDSNPELRSKIALIDNFIKLHIDGRQSNDLPADMESDLDKYIATQKAIAIEQVATEEGIDSTLLHEYISEYEYLGK PKNEIIKRAIDPLKLSFMDAQSKKKSLIDKMKDIIKLFSWN
Sequences:
NA
Specific function: NA
COG id: COG0610
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA