Definition Bacteroides fragilis NCTC 9343 chromosome, complete genome.
Accession NC_003228
Length 5,205,140

Click here to switch to the map view.

The map label for this gene is hsdR

Identifier: 60681327

GI number:

Start: 2141547

End: 2144312

Strand: Direct

Name: hsdR

Synonym: BF1836

Alternate gene names: NA

Gene position: NA

Preceding gene: 60681326

Following gene: 60681328

Centisome position: NA

GC content: NA

Gene sequence:

>2766_bases
ATGACAATACAGTCAGAACAAGCATTAGAGCAAGGTTTGATAAAAACACTAGTCTCTATGAATTATCAGAAGATTGAAAT
AGCAGATGAAAATGCTCTGATTGTCAATTTTCGTAATCAACTTAATATACATAACAATATCGAGCTTACCGATGATGAGT
TTAATCGAATAATGATTCATTTGGACAGTGGCTCAATATTCGTAAAAGCAGAAAAACTTCGTAATCGCTTCCCACTCACT
CGTGATGATGAGTCGGTAAAGTGGATTGAGTTCCTAAACACACAAGAGTGGTGTAAGAATGAATTTCAGGTTTCCAATCA
GATTACCGATGAGGGTAGACGTAAATGTAGGTATGATGTTACGATTTTGGTTAATGGACTACCGCTGGTACAAGTGGAGC
TGAAAAAACGTGGTGTAGAACTTAAACAGGCATACAGCCAAGTTCAACGCTACCACAAAACAGCATTCAAGGGACTATTT
AACTATATTCAGATATTTGTCATCTCAAACGGTGTAAACACTCGCTACTTCGCCAATAATCCAAATCAAGGATATAAGTT
TACATTCCCTTGGGCAGATTTCAAAAACAACCATATTGACAGATTAGATCTCTTTGCTGCGATGTTTTTTGAACAATGTA
CACTGGGGAAAATGCTTGCCAAATATGTTGTGTTGCACCAATCAGACAAGTGCCTGATGATTCTCAGACCGTATCAATTT
TATGCAGTTGAGGCTTTGCTTGACAAGGTTGCTAACTCTGTCAAGAACGGATATATTTGGCACACTACAGGCAGTGGTAA
GACGCTTACATCCTTTAAAGCGGCTCAACTAATAGCCGAAATGAGTGATATTGATAAAGTGCTATTTGTTGTTGACAGGC
ACGATTTGGATACCCAAACCAAGAAAGAGTATGATGCTTTTGCTCCGGGAGCAGTGGATAGTACCGACAATACAAAAGAG
TTGGTGAAGGCATTGCAGGGCAAGAAAAAACTGATGATTACTACAATTCAAAAACTGAATAACGCAGTTCAGAAAGATAG
ATACAGTAAAGGCTTACAAGGGGTAAAAGATAAAAATATTGTAATGATATTTGATGAGTGTCACCGCAGCCAGTTCGGAG
AAATGCATTCTAATATAACAGGCTTTTTTAGCAAAATCCGCTACTTTGGATTTACAGGAACCCCCATTTTTGCGGACAAT
GCCAACAATGGTTGCACAACAAAAGATATTTTTGGTGAAAGACTTCACGAATATCTAATCAAAGATGCTATTGCAGATGA
AAACGTACTCGGATTCTTGGTGGAGTATCATGGCAAATGGAAACGAAAAAGTGAAAACGACAAACAGGTTAAATCTATTG
ATACAGCAGAAGTACTATTGAAGGATGAAAGGATAGCCTCAATAACCGATTTTATACTTTCCAACTATAACTCTTCGACA
TACGAAAGAGATTTCAATGCGATGTTGGCAGTTGGTGGAGTTAAAATGCTCATTAAATATTACGATATGTTTAAGAGTCG
CAACCACGACTTAAAGATTGCTACGATCTTCACATATACTCAAAATGAAGAATCAGAGGACGAATTTACAGGTTTAGGGC
AAGGATTTGTTTCTGTTCAAAACACCCGAGATATTTTAGAGAGCTATATCAAAGATTACAACGAGACATTTGGGACGGAA
TTTGACACAGACCATTTCGGGCTATACTACGATGATATCAATAAGCGAATGAAAAACCGTCAAATCGACCTCTTGATAGT
CTCCGATATGTTTCTTACGGGGTTCGATGCTAAGAAACTCAATACACTTTACGTCGACAAAAACCTCAACTATCACGGTC
TATTACAAGCATTTTCACGAACAAATCGCGTGCTGAATGAGAAGAAAAAATTTGGTAAAATCACTTGTTTCAGAGACCTT
AAACAACAGACGGACGATGCAATAAAACTTTACTCCAATAACAAATCGTCAGAGGTAGTCTTAATGAAACCTTACGAAAA
ACTTGTTGAGCGATTCAATGAGATGGCAGCCGAATTTTTATCCTATTTCCCTACGGTAAAAAGCGTTGGCAACTTAGAAT
CAGAGTTAGACAAACGCCGCTTTGTCATTCTCTTCAGAGCAATGCTAAGACTAAGAAATGAGGTGAAGGGATATAATGAA
TTTGATGCAGAAGATCTTACAATTGAAGAACAACGATTTGCGGACTATCAAAGCAAATACCTTGATATGTCCAATGAGTT
TGCTATTACCTCGGAAAAGGAAGATGCCGAAAGTATTCTGCAAGATATAGATTTTGAGTTAGAATTAGTGCACCGAGATA
TTATCAATGTGATGTATATTCTTGCTCTGCTTCAAGACCTCAAGCCGGAGTCTTCATCATATCCAAAAGACAGGAAAGCG
GTTCTTGACACAATGGACTCCAACCCTGAACTGCGTTCTAAGATTGCCCTAATCGACAACTTTATCAAGTTGCATATTGA
CGGACGGCAAAGCAATGATTTACCTGCTGATATGGAGAGCGATTTGGATAAATACATTGCCACTCAAAAGGCTATTGCCA
TAGAGCAAGTTGCCACAGAGGAGGGGATTGATAGTACCCTATTGCACGAATATATTTCTGAATATGAGTATTTAGGGAAA
CCTAAAAACGAAATTATCAAACGAGCCATTGATCCGCTTAAATTATCATTTATGGATGCTCAATCCAAAAAAAAGAGTCT
AATCGACAAAATGAAAGATATTATTAAACTGTTTAGCTGGAATTAA

Upstream 100 bases:

>100_bases
GTTCTAATAAGATTCAACCTTCTATAGAGACGTTAGATGAAATAGCTATTCTGCTAAATGTAGATGTGCGAGAATTATTA
AATAAAAGTAAATTGAAAGT

Downstream 100 bases:

>100_bases
AAATATGAAATTACCGGAGCCGCAATCATCTACTTTTTCAGGCTTAATTAGCGATATTGAAAAAGGCCAAATTAAAATCC
CTCAGTTTCAACGAGAATTT

Product: putative type I restriction enzyme R protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>921_residues
MTIQSEQALEQGLIKTLVSMNYQKIEIADENALIVNFRNQLNIHNNIELTDDEFNRIMIHLDSGSIFVKAEKLRNRFPLT
RDDESVKWIEFLNTQEWCKNEFQVSNQITDEGRRKCRYDVTILVNGLPLVQVELKKRGVELKQAYSQVQRYHKTAFKGLF
NYIQIFVISNGVNTRYFANNPNQGYKFTFPWADFKNNHIDRLDLFAAMFFEQCTLGKMLAKYVVLHQSDKCLMILRPYQF
YAVEALLDKVANSVKNGYIWHTTGSGKTLTSFKAAQLIAEMSDIDKVLFVVDRHDLDTQTKKEYDAFAPGAVDSTDNTKE
LVKALQGKKKLMITTIQKLNNAVQKDRYSKGLQGVKDKNIVMIFDECHRSQFGEMHSNITGFFSKIRYFGFTGTPIFADN
ANNGCTTKDIFGERLHEYLIKDAIADENVLGFLVEYHGKWKRKSENDKQVKSIDTAEVLLKDERIASITDFILSNYNSST
YERDFNAMLAVGGVKMLIKYYDMFKSRNHDLKIATIFTYTQNEESEDEFTGLGQGFVSVQNTRDILESYIKDYNETFGTE
FDTDHFGLYYDDINKRMKNRQIDLLIVSDMFLTGFDAKKLNTLYVDKNLNYHGLLQAFSRTNRVLNEKKKFGKITCFRDL
KQQTDDAIKLYSNNKSSEVVLMKPYEKLVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNE
FDAEDLTIEEQRFADYQSKYLDMSNEFAITSEKEDAESILQDIDFELELVHRDIINVMYILALLQDLKPESSSYPKDRKA
VLDTMDSNPELRSKIALIDNFIKLHIDGRQSNDLPADMESDLDKYIATQKAIAIEQVATEEGIDSTLLHEYISEYEYLGK
PKNEIIKRAIDPLKLSFMDAQSKKKSLIDKMKDIIKLFSWN

Sequences:
NA

Specific function: NA

COG id: COG0610

COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA