Click here to switch to the map view.

The map label for this gene is srpR [H]

Identifier: 60620671

GI number: 60620671

Start: 297799

End: 298875

Strand: Reverse

Name: srpR [H]

Synonym: SSO0348

Alternate gene names: 60620671

Gene position: 298875-297799 (Counterclockwise)

Preceding gene: 15897284

Following gene: 15897282

Centisome position: 9.99

GC content: 32.22

Gene sequence:

>1077_bases
ATAAATTGTTTTGATAAAATAAGGAAAGCTTTTTCTAATTTTGTAGATAAATTAAAGGGAGAGCAAGAAGAGACACAAAA
GATCGAACAAAATATCCCTTCTACAGAGACAACTATTAGTAATCAACAGCAGACTAGTAATAACATAACGGATCAATCAG
TAACTAGTGAAGTAAAGGAAGAAACTAAAGAAGAGAGGAAGAGTGGTGGAAGTATTTTTGATGTTTTTAGATATAGAGAA
ATTAAGGAGAAAGATATAGAAGACTTCATAGAGGAATTGAGATATCAGCTACTGGAAAGTGACGTTTCTTTTGAAGTTAC
TGAGAAAATTCTTGAAGATCTGAAAGAAAACATAATCGGCAAAAAGGTAAAACGAAGCGATGATCTTGAAAGAATAGTAA
AGGATTCTCTGAAAAAATCTATCACTGAGATAATAACAAAGAATAATGCCATAAATGTATTAGAAGAAATAAAAAAATCA
CCAAAACCTTATATAATAATATTTTTCGGAATAAACGGAGTAGGTAAAACTACAACTATTGCGAAATTTGCATATATGCT
TAAAAAAAATGGCTTATCGTGTATTATTTCAGCTTCAGATACGTTTAGAGCAGCAGCGCAAGAACAGTTGGAAGTTCATT
CAAGAAACTTAGAGATACCTTTAATTAAAGGTAGATATGGAGGTGACCCTGCCTCAGTTGCTTTTGATGCAATACGTGCA
GCTAAAAGTAGGGGTATAGATGTAGTCTTAATAGATACTGCTGGAAGAATGCATACTGACACTGATTTAGTGAATGAGCT
AAAGAGAGTTGTTAATATTGCAAAGCCAAATCTAAAAATATTAGTTTTAGACTCCCTAGGTGGAAACGATGCATTAGAGC
AAGCTAAATACTTCGAAAATAATGTTGGATTCGATCTAGTAATATTAACTAAAGTCGATGCAGATGTAAAAGGCGGTGTA
ATATTATCGTTAGCTTATGAATTAAATAAGCCTGTTGGATATTTAGGAATAGGTCAGGCTTATGATGATCTAATTCCATT
TAATGCCGAATGGTTCATTCAGAGATTATTCAGTTAA

Upstream 100 bases:

>100_bases
ATCTAAATAATGAACTTCAAAAAGCTGCTAGTACATATAATCAGATAGTTGACATACTAAATCAAATACAGCAAGCAGCT
GCCAGGAGACAACAAGGTGA

Downstream 100 bases:

>100_bases
CTTAAATACCTTAAACCAATTATAAATTACTGTGAGTTCAAATAAGATAATTAACTGGTTCAGAAGGCTTAGAGAGGATT
GGAATAGAATAATTACAGTA

Product: signal recognition particle receptor protein

Products: NA

Alternate protein names: Docking protein; P41 [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MNCFDKIRKAFSNFVDKLKGEQEETQKIEQNIPSTETTISNQQQTSNNITDQSVTSEVKEETKEERKSGGSIFDVFRYRE
IKEKDIEDFIEELRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKS
PKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRA
AKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNIAKPNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGV
ILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQRLFS

Sequences:

>Translated_358_residues
MNCFDKIRKAFSNFVDKLKGEQEETQKIEQNIPSTETTISNQQQTSNNITDQSVTSEVKEETKEERKSGGSIFDVFRYRE
IKEKDIEDFIEELRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKS
PKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRA
AKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNIAKPNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGV
ILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQRLFS
>Mature_358_residues
MNCFDKIRKAFSNFVDKLKGEQEETQKIEQNIPSTETTISNQQQTSNNITDQSVTSEVKEETKEERKSGGSIFDVFRYRE
IKEKDIEDFIEELRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKS
PKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRA
AKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNIAKPNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGV
ILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQRLFS

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI23308697, Length=319, Percent_Identity=31.0344827586207, Blast_Score=178, Evalue=7e-45,
Organism=Homo sapiens, GI295424842, Length=319, Percent_Identity=31.0344827586207, Blast_Score=178, Evalue=7e-45,
Organism=Homo sapiens, GI4507215, Length=283, Percent_Identity=29.6819787985866, Blast_Score=134, Evalue=9e-32,
Organism=Homo sapiens, GI226371618, Length=197, Percent_Identity=32.994923857868, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI89061728, Length=130, Percent_Identity=31.5384615384615, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1789874, Length=266, Percent_Identity=41.3533834586466, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1788963, Length=283, Percent_Identity=30.0353356890459, Blast_Score=153, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI193206261, Length=317, Percent_Identity=32.1766561514196, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17539958, Length=283, Percent_Identity=28.6219081272085, Blast_Score=128, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6320498, Length=322, Percent_Identity=31.3664596273292, Blast_Score=170, Evalue=3e-43,
Organism=Saccharomyces cerevisiae, GI6325345, Length=264, Percent_Identity=31.8181818181818, Blast_Score=143, Evalue=5e-35,
Organism=Drosophila melanogaster, GI24641198, Length=338, Percent_Identity=31.0650887573964, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI17647949, Length=294, Percent_Identity=29.2517006802721, Blast_Score=138, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 40301; Mature: 40301

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCFDKIRKAFSNFVDKLKGEQEETQKIEQNIPSTETTISNQQQTSNNITDQSVTSEVKE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCHHHCCCCCHHHHHHHHHH
ETKEERKSGGSIFDVFRYREIKEKDIEDFIEELRYQLLESDVSFEVTEKILEDLKENIIG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKSPKPYIIIFFGINGVGKTTTI
HHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH
AKFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRA
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
AKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNIAKPNLKILVLDSLGGNDALEQAKYFEN
HHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
NVGFDLVILTKVDADVKGGVILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQRLFS
CCCEEEEEEEEECCCCCCCEEEEEEHHHCCCCCEEECCHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MNCFDKIRKAFSNFVDKLKGEQEETQKIEQNIPSTETTISNQQQTSNNITDQSVTSEVKE
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCHHHCCCCCHHHHHHHHHH
ETKEERKSGGSIFDVFRYREIKEKDIEDFIEELRYQLLESDVSFEVTEKILEDLKENIIG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKSPKPYIIIFFGINGVGKTTTI
HHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH
AKFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRA
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
AKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNIAKPNLKILVLDSLGGNDALEQAKYFEN
HHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
NVGFDLVILTKVDADVKGGVILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQRLFS
CCCEEEEEEEEECCCCCCCEEEEEEHHHCCCCCEEECCHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658539; 8935656 [H]