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The map label for this gene is cspG [H]

Identifier: 59714277

GI number: 59714277

Start: 1233192

End: 1233401

Strand: Reverse

Name: cspG [H]

Synonym: VF_A1094

Alternate gene names: 59714277

Gene position: 1233401-1233192 (Counterclockwise)

Preceding gene: 59714278

Following gene: 59714276

Centisome position: 92.71

GC content: 41.43

Gene sequence:

>210_bases
ATGTCTAAAACAACTGGTATCGTTAAATGGTTTAACGAAGAAAAAGGTTTTGGTTTCATCACTCAAGATAACGGCGGCGC
TGACGTATTCGTACATTTCCGTGCTATCGCTTCAGAAGGTTTCAAAACTCTTGCTGAAGGCCAAAAAGTTTCTTTTGAAG
TTGAGCAAGGCCAAAAAGGCCCTCAAGCTGCTAACGTTGTAGCGCTTTAA

Upstream 100 bases:

>100_bases
CTCAGTGTCTCCCTTAGCTTTATCGCCACATTTAATAATTCAAGCTCAAGCACATCGCATAATGCGATTTTTATGAATTC
TTACTAAGAAGGGACATAAT

Downstream 100 bases:

>100_bases
TTTCAAATAAGTTGCGTGAGTGGTGCTTGCATCATTTACGCTACTTTAACAATGCATTATTAATAATTAAATTAGCTCTA
CTTGTAAGATTGCAACATTT

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKGPQAANVVAL

Sequences:

>Translated_69_residues
MSKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKGPQAANVVAL
>Mature_68_residues
SKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKGPQAANVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=69.5652173913043, Blast_Score=100, Evalue=1e-23,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=67.6470588235294, Blast_Score=99, Evalue=6e-23,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=67.1641791044776, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=66.6666666666667, Blast_Score=95, Evalue=9e-22,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=64.7058823529412, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=60.6060606060606, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=50, Blast_Score=73, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7449; Mature: 7318

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG
CCCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEHHHHHHHHHCCCCEEEEEECCCCCC
PQAANVVAL
CCCCEEEEC
>Mature Secondary Structure 
SKTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQKG
CCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEHHHHHHHHHCCCCEEEEEECCCCCC
PQAANVVAL
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]