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The map label for this gene is ydiK [C]

Identifier: 59714262

GI number: 59714262

Start: 1218104

End: 1219192

Strand: Reverse

Name: ydiK [C]

Synonym: VF_A1079

Alternate gene names: 59714262

Gene position: 1219192-1218104 (Counterclockwise)

Preceding gene: 59714263

Following gene: 59714261

Centisome position: 91.65

GC content: 39.03

Gene sequence:

>1089_bases
ATGAAACTTGATCATAATTTCTCTAACCAAGCGATCGACGCATTTATTAAGATTAGTGCTCTTTCTGTGCTTGTTTTATG
GTGTTTTTCTATCTTAAAACCATTTCTTTTATTGATGGTATGGGGAGGGATTATTGCAACCGCTTTATACCCAATAGTTG
CTTTCTTTAGTAAGAAAACAGCATTAAGTGAAAGCAAAGTGAGTATTATTTTAACGGTTATTGGGGTGTTACTGTTATTG
ATTCCATTGGTAGCGCTTTCTACAGGCATTTATACGAGTGGAACTGAGTTATTTTTAGGTTATCAAGATGGCAGTATTGC
TATACCTAAACCAAAAGAGCGTATGCAAGACTGGCCGATTATTGGCCACGAAGCTTATTCTTTTATGTCATTGGCATCAT
CGAATCTAGAAAGTTTACTTTTTAAATACAGCGCAGAAGTAAAAGTGGTGGCTGCAAAAGCCGCGTCACTCGTTGGCTCT
CTTGGCGGTGGATTTATTCAATTTATTGTCTCTACAATTATCGCAGGCGTGTTTATGGCCAATGCGGCTAAATGTGAACG
AGCCTTTATTTTAATTACTAACCGATTGACGGGTAAGCATGGTGAAGAGTTAATAAAACTTTCAAAAATCACTATAAGAA
GTGTCGTTCAAGGGGTGATTGGTGTCGCGGTAATACAAGCTACAATGGCAGGATTAGGAATGGCGGTGGTTGGCATTTCT
GCATCAGTTCTTGGATTGTGGGTATTTCTTGTTCTTGTCTTTGCTATTATTCAGTTACCGCCTATTTTGATTCTTCTGCC
CATCATTTTTTATGTATTCAGCGTTGATACAACGACAGCCGGTGTATTGTTTGCTGTGTGGTGTGTATTGGTAAGCAGCA
GTGACGCAATTTTAAAGCCGGTATTGTTAAGCCGTGGCTCTCATATTCCTATTATTGTGATTCTACTGGGAGCGTTAGGA
GGAATGGCAATGTCTGGAATTGTTGGTTTGTTTGTTGGTGCCGTTGTGTTGAGTCTTACCTACCAGATGTTTACTGTATG
GCTTAAGAACGAAGCTGAAGAAACTCAAAATGCAAAAGATAATCCATAG

Upstream 100 bases:

>100_bases
GAGAAAAAAGCTAACTTTAGCTGAGTAATACACTATACATATAAGTAATACAGACCCGAGTTTAATTTGGGTTACCCCTT
TTAAGTAACAAGGAATGTTT

Downstream 100 bases:

>100_bases
AGTTGCTTATAAGAACTTAATGTAGAGTGAGTTTAATTAGACTTGAATGATTTTTATCATATAGAGAACGATTGCTTCTT
GATATAGTCATAGCTAATAG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKLDHNFSNQAIDAFIKISALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLLL
IPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESLLFKYSAEVKVVAAKAASLVGS
LGGGFIQFIVSTIIAGVFMANAAKCERAFILITNRLTGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGIS
ASVLGLWVFLVLVFAIIQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVLVSSSDAILKPVLLSRGSHIPIIVILLGALG
GMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDNP

Sequences:

>Translated_362_residues
MKLDHNFSNQAIDAFIKISALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLLL
IPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESLLFKYSAEVKVVAAKAASLVGS
LGGGFIQFIVSTIIAGVFMANAAKCERAFILITNRLTGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGIS
ASVLGLWVFLVLVFAIIQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVLVSSSDAILKPVLLSRGSHIPIIVILLGALG
GMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDNP
>Mature_362_residues
MKLDHNFSNQAIDAFIKISALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLLL
IPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESLLFKYSAEVKVVAAKAASLVGS
LGGGFIQFIVSTIIAGVFMANAAKCERAFILITNRLTGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGIS
ASVLGLWVFLVLVFAIIQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVLVSSSDAILKPVLLSRGSHIPIIVILLGALG
GMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDNP

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=343, Percent_Identity=24.4897959183673, Blast_Score=131, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 38665; Mature: 38665

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDHNFSNQAIDAFIKISALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSESKVSIILTVIGVLLLLIPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPI
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCHHHHCCCCC
IGHEAYSFMSLASSNLESLLFKYSAEVKVVAAKAASLVGSLGGGFIQFIVSTIIAGVFMA
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
NAAKCERAFILITNRLTGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGIS
HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVLGLWVFLVLVFAIIQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVLVSSSDAILKP
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
VLLSRGSHIPIIVILLGALGGMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NP
CC
>Mature Secondary Structure
MKLDHNFSNQAIDAFIKISALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSESKVSIILTVIGVLLLLIPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPI
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCHHHHCCCCC
IGHEAYSFMSLASSNLESLLFKYSAEVKVVAAKAASLVGSLGGGFIQFIVSTIIAGVFMA
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
NAAKCERAFILITNRLTGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGIS
HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVLGLWVFLVLVFAIIQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVLVSSSDAILKP
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
VLLSRGSHIPIIVILLGALGGMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]