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The map label for this gene is kduI [H]

Identifier: 59714181

GI number: 59714181

Start: 1122550

End: 1123380

Strand: Reverse

Name: kduI [H]

Synonym: VF_A0998

Alternate gene names: 59714181

Gene position: 1123380-1122550 (Counterclockwise)

Preceding gene: 59714182

Following gene: 59714180

Centisome position: 84.44

GC content: 40.91

Gene sequence:

>831_bases
ATGGAAATTCGTCAACCGATTCATAGCGATCACGCAAAACAACTAGATACAGCAGGATTGCGTGAACAATTCCTTATTGA
AGGGATGTTTCAAGAAAACCAAATTACTCTTACATACAGTCACATTGACCGCATTATTGTTGGTGGTGTTGTACCTACAT
CAGAAAGTGTTCCATTTGAAGGTGGAAAAGAAATTGGTGTGGATTTCTTTTTGCAACGCCGTGAACTAGGCATTATTAAT
ATTGGGCAAGCTGGCCGAGTGATTGTTGATGGTGTGACTTATGATATTGCTGCTCGTGAAGCCATGTATGTAGGCATGGG
AGCTGAAGAGATCAGCTTTGAAAGCGTTGATCAACAAGACCCCGCTCGTTTTTATTTAAATTGTGCACCAGCACATCATG
CTTATCCAACTCGTAAAATTACACGTGAAGAAGCCTCTCCTGAAACATTGGGTAATCAAGAAAACTGCAACGTTCGAACC
ATTTACAAATACTTGCACCCATCAGTACTGCCAACGTGCCAACTATTAATGGGAATGACTGAATTAGCACCAGGCAGTCT
ATGGAACACCATGCCTTGTCATACTCATGAACGTCGTATGGAAGTGTATTTATACTTTGATATGAAAGACGACAACATTG
TTTTCCATTACATGGGTGAGCCTCAAGAGACACGTCATATGGTTGTTCGAAATGAACAAGCCGTTATTAGCCCTAGTTGG
TCTATTCATTCAGGCGTTGGTACATCGTCATATACGTTTATTTGGGGCATGGTCGGTGAAAACCAAACTTTTCATGATAT
GGACCATGTAGCAATGACTGATATTAAGTAG

Upstream 100 bases:

>100_bases
TCTCGTCATTTTTATTAAAGATTCATAGCTATCTAAATAAACATCTAATAATGAATTATTTAGATAGCTATAACACAAAA
CAATGTTTTAGAGGTTTAAA

Downstream 100 bases:

>100_bases
TCATTTTAATTTTATTGTTATGTTGCTGATGTCTATCGGCAGCATATATCAAGAATAGTAGGAAAGAATATGAAACTTTT
TGATTTAACTGGCAAAGTTG

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MEIRQPIHSDHAKQLDTAGLREQFLIEGMFQENQITLTYSHIDRIIVGGVVPTSESVPFEGGKEIGVDFFLQRRELGIIN
IGQAGRVIVDGVTYDIAAREAMYVGMGAEEISFESVDQQDPARFYLNCAPAHHAYPTRKITREEASPETLGNQENCNVRT
IYKYLHPSVLPTCQLLMGMTELAPGSLWNTMPCHTHERRMEVYLYFDMKDDNIVFHYMGEPQETRHMVVRNEQAVISPSW
SIHSGVGTSSYTFIWGMVGENQTFHDMDHVAMTDIK

Sequences:

>Translated_276_residues
MEIRQPIHSDHAKQLDTAGLREQFLIEGMFQENQITLTYSHIDRIIVGGVVPTSESVPFEGGKEIGVDFFLQRRELGIIN
IGQAGRVIVDGVTYDIAAREAMYVGMGAEEISFESVDQQDPARFYLNCAPAHHAYPTRKITREEASPETLGNQENCNVRT
IYKYLHPSVLPTCQLLMGMTELAPGSLWNTMPCHTHERRMEVYLYFDMKDDNIVFHYMGEPQETRHMVVRNEQAVISPSW
SIHSGVGTSSYTFIWGMVGENQTFHDMDHVAMTDIK
>Mature_276_residues
MEIRQPIHSDHAKQLDTAGLREQFLIEGMFQENQITLTYSHIDRIIVGGVVPTSESVPFEGGKEIGVDFFLQRRELGIIN
IGQAGRVIVDGVTYDIAAREAMYVGMGAEEISFESVDQQDPARFYLNCAPAHHAYPTRKITREEASPETLGNQENCNVRT
IYKYLHPSVLPTCQLLMGMTELAPGSLWNTMPCHTHERRMEVYLYFDMKDDNIVFHYMGEPQETRHMVVRNEQAVISPSW
SIHSGVGTSSYTFIWGMVGENQTFHDMDHVAMTDIK

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family [H]

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=65.1079136690647, Blast_Score=395, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120 [H]

Pfam domain/function: PF04962 KduI [H]

EC number: =5.3.1.17 [H]

Molecular weight: Translated: 31360; Mature: 31360

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00108 PROTEIN_KINASE_ST

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRQPIHSDHAKQLDTAGLREQFLIEGMFQENQITLTYSHIDRIIVGGVVPTSESVPFE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCEEEECCCCCCCCCCCCC
GGKEIGVDFFLQRRELGIINIGQAGRVIVDGVTYDIAAREAMYVGMGAEEISFESVDQQD
CCCCCCHHHEEECCCCCEEEECCCCEEEECCCEEEHHHCEEEEEECCHHHCCCCCCCCCC
PARFYLNCAPAHHAYPTRKITREEASPETLGNQENCNVRTIYKYLHPSVLPTCQLLMGMT
CCEEEEEECCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
ELAPGSLWNTMPCHTHERRMEVYLYFDMKDDNIVFHYMGEPQETRHMVVRNEQAVISPSW
HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCHHHEEEEECCCEEECCCC
SIHSGVGTSSYTFIWGMVGENQTFHDMDHVAMTDIK
CEECCCCCCCEEEEEEECCCCCCCCCCCCEEEECCC
>Mature Secondary Structure
MEIRQPIHSDHAKQLDTAGLREQFLIEGMFQENQITLTYSHIDRIIVGGVVPTSESVPFE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCEEEECCCCCCCCCCCCC
GGKEIGVDFFLQRRELGIINIGQAGRVIVDGVTYDIAAREAMYVGMGAEEISFESVDQQD
CCCCCCHHHEEECCCCCEEEECCCCEEEECCCEEEHHHCEEEEEECCHHHCCCCCCCCCC
PARFYLNCAPAHHAYPTRKITREEASPETLGNQENCNVRTIYKYLHPSVLPTCQLLMGMT
CCEEEEEECCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
ELAPGSLWNTMPCHTHERRMEVYLYFDMKDDNIVFHYMGEPQETRHMVVRNEQAVISPSW
HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCHHHEEEEECCCEEECCCC
SIHSGVGTSSYTFIWGMVGENQTFHDMDHVAMTDIK
CEECCCCCCCEEEEEEECCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA