Click here to switch to the map view.

The map label for this gene is hlyB [H]

Identifier: 59714074

GI number: 59714074

Start: 1009204

End: 1010412

Strand: Reverse

Name: hlyB [H]

Synonym: VF_A0891

Alternate gene names: 59714074

Gene position: 1010412-1009204 (Counterclockwise)

Preceding gene: 59714075

Following gene: 59714071

Centisome position: 75.95

GC content: 28.78

Gene sequence:

>1209_bases
ATGAAGCAATCAAAATCTATAAAATTTAAAGTTTTATTTATATTGTATAGTATATTATTAATGTTGTTTGTAAACGGTGT
TGTTGTAATAAACCAAATTGAGGATTTTTTTTCAAAAGATATTATTAAACATCTTATAATATTTAATTATATTATTGTTT
TTTTGACTTTTATATCTGCTATTTTTACATATAATAGCATTATACCTCATTTGAAAGTATTAACAGAACATATGAATCAA
TTACAAAAGTTTGATTTACGAGAGGGCCCTGTTTGTGAGGCATTAAATATTGGTAAATTTAAATATGATGAGTTTGGTAA
AATAGCATTAGGGTTAAGAAGCTTTAGGATTCCAGTACATAATCTAGTTCAGGAGCTTGCAAATAATAGTGGTATTGTTA
TTTCAGGTATGGGGACTGTTAATAATATTATTAACGATTTAAATGATATGGGTATGGAGCAAGAGTCAAAAATAACTCAA
ATAGTTACAGCTAGTGATCAAATGTATTCCACTATCATTAATGTTGTTAAAAATACAGAGCAATCATCAGTTGATTCTAG
TATTGCCTTATCTGAAAGTGAGAAAGCAAAAGAATTAATAAACATGTCCTCAGAGTCAGTGAATCTTGTACATGAAGCAA
TTACCTCATGCTCTGAATCTGTTCGAGATTTGAAAGTTGAGACTCAAAATATTAATGATATTATATATATTATTAGCAAT
ATTGCGGAGCAAACTAATCTATTAGCACTAAATGCAGCAATAGAAGCAGCAAGGGCTGGTGAATCTGGTCGAGGTTTTGC
TGTAGTTGCTGATGAAGTTAGAGTACTCGCGCAAAAAACACAAGAATCTACTGGGAAAATTAATACAATTGTTGACACTA
TTATGTCAAGAACATTACATGTTAGTGATATTATGGAAAAACAAGTGATTACTTTGATTGACGATTGTGTCAGTAAATCG
ATAGTTGTTAATAAATCGATAGATATAATTGTCGAGGGTATTAGAAAAATGAGTGACTCAAGTGTTGTTATTGCGACGGC
TACAGAAGAACAAGCTATTGCTATTAGTGATGTTAATCGAAATATTAATGATCTGTATCTTTCAACGAAAGAAGCATCAG
AAAAAATGAAAGATGTATATTTTCAATGTAATAATGTGATGACTTTAATTAATAAACAAGATAAAGGTTTAAGTAATTTT
ACAATATAA

Upstream 100 bases:

>100_bases
CATTTTATGTTTTGTAATTTGCATAAAATAACTGAATTGGTTTGTGAAAAGTCTATATAGTTTTAGTTTTAATGTGGTTT
TTATTTAATTGAGGTTTGTA

Downstream 100 bases:

>100_bases
TTTGGTGGGATTTACTCCCACCCCATAATTATTACATTCGTAGCCGCTATTATGATAGGATATCAGTGATAAGCTATCCA
TGAGAGAATATCTTAATTAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MKQSKSIKFKVLFILYSILLMLFVNGVVVINQIEDFFSKDIIKHLIIFNYIIVFLTFISAIFTYNSIIPHLKVLTEHMNQ
LQKFDLREGPVCEALNIGKFKYDEFGKIALGLRSFRIPVHNLVQELANNSGIVISGMGTVNNIINDLNDMGMEQESKITQ
IVTASDQMYSTIINVVKNTEQSSVDSSIALSESEKAKELINMSSESVNLVHEAITSCSESVRDLKVETQNINDIIYIISN
IAEQTNLLALNAAIEAARAGESGRGFAVVADEVRVLAQKTQESTGKINTIVDTIMSRTLHVSDIMEKQVITLIDDCVSKS
IVVNKSIDIIVEGIRKMSDSSVVIATATEEQAIAISDVNRNINDLYLSTKEASEKMKDVYFQCNNVMTLINKQDKGLSNF
TI

Sequences:

>Translated_402_residues
MKQSKSIKFKVLFILYSILLMLFVNGVVVINQIEDFFSKDIIKHLIIFNYIIVFLTFISAIFTYNSIIPHLKVLTEHMNQ
LQKFDLREGPVCEALNIGKFKYDEFGKIALGLRSFRIPVHNLVQELANNSGIVISGMGTVNNIINDLNDMGMEQESKITQ
IVTASDQMYSTIINVVKNTEQSSVDSSIALSESEKAKELINMSSESVNLVHEAITSCSESVRDLKVETQNINDIIYIISN
IAEQTNLLALNAAIEAARAGESGRGFAVVADEVRVLAQKTQESTGKINTIVDTIMSRTLHVSDIMEKQVITLIDDCVSKS
IVVNKSIDIIVEGIRKMSDSSVVIATATEEQAIAISDVNRNINDLYLSTKEASEKMKDVYFQCNNVMTLINKQDKGLSNF
TI
>Mature_402_residues
MKQSKSIKFKVLFILYSILLMLFVNGVVVINQIEDFFSKDIIKHLIIFNYIIVFLTFISAIFTYNSIIPHLKVLTEHMNQ
LQKFDLREGPVCEALNIGKFKYDEFGKIALGLRSFRIPVHNLVQELANNSGIVISGMGTVNNIINDLNDMGMEQESKITQ
IVTASDQMYSTIINVVKNTEQSSVDSSIALSESEKAKELINMSSESVNLVHEAITSCSESVRDLKVETQNINDIIYIISN
IAEQTNLLALNAAIEAARAGESGRGFAVVADEVRVLAQKTQESTGKINTIVDTIMSRTLHVSDIMEKQVITLIDDCVSKS
IVVNKSIDIIVEGIRKMSDSSVVIATATEEQAIAISDVNRNINDLYLSTKEASEKMKDVYFQCNNVMTLINKQDKGLSNF
TI

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=317, Percent_Identity=28.0757097791798, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788194, Length=326, Percent_Identity=26.3803680981595, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788195, Length=264, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789453, Length=337, Percent_Identity=25.2225519287834, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787690, Length=220, Percent_Identity=30.9090909090909, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 44737; Mature: 44737

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSKSIKFKVLFILYSILLMLFVNGVVVINQIEDFFSKDIIKHLIIFNYIIVFLTFISA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFTYNSIIPHLKVLTEHMNQLQKFDLREGPVCEALNIGKFKYDEFGKIALGLRSFRIPVH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
NLVQELANNSGIVISGMGTVNNIINDLNDMGMEQESKITQIVTASDQMYSTIINVVKNTE
HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
QSSVDSSIALSESEKAKELINMSSESVNLVHEAITSCSESVRDLKVETQNINDIIYIISN
HHHCCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IAEQTNLLALNAAIEAARAGESGRGFAVVADEVRVLAQKTQESTGKINTIVDTIMSRTLH
HHHHHHEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VSDIMEKQVITLIDDCVSKSIVVNKSIDIIVEGIRKMSDSSVVIATATEEQAIAISDVNR
HHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHCCC
NINDLYLSTKEASEKMKDVYFQCNNVMTLINKQDKGLSNFTI
CHHHHEEEHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCC
>Mature Secondary Structure
MKQSKSIKFKVLFILYSILLMLFVNGVVVINQIEDFFSKDIIKHLIIFNYIIVFLTFISA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFTYNSIIPHLKVLTEHMNQLQKFDLREGPVCEALNIGKFKYDEFGKIALGLRSFRIPVH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
NLVQELANNSGIVISGMGTVNNIINDLNDMGMEQESKITQIVTASDQMYSTIINVVKNTE
HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
QSSVDSSIALSESEKAKELINMSSESVNLVHEAITSCSESVRDLKVETQNINDIIYIISN
HHHCCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IAEQTNLLALNAAIEAARAGESGRGFAVVADEVRVLAQKTQESTGKINTIVDTIMSRTLH
HHHHHHEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VSDIMEKQVITLIDDCVSKSIVVNKSIDIIVEGIRKMSDSSVVIATATEEQAIAISDVNR
HHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHCCC
NINDLYLSTKEASEKMKDVYFQCNNVMTLINKQDKGLSNFTI
CHHHHEEEHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]