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The map label for this gene is tcpC [H]

Identifier: 59714055

GI number: 59714055

Start: 983724

End: 985178

Strand: Reverse

Name: tcpC [H]

Synonym: VF_A0872

Alternate gene names: 59714055

Gene position: 985178-983724 (Counterclockwise)

Preceding gene: 59714056

Following gene: 59714054

Centisome position: 74.05

GC content: 32.99

Gene sequence:

>1455_bases
ATGAAGAAAAAAGCATTGATTTTGATTATATCTATATTATCTGGATGCTCTTCAACTAATATGAGTGATAAAAATGAGAA
CTCATTAGATCTTATAGTGGATAAAGAAATAGAATCTCGTAACTTGAGAACATCTAATTTCTCAATTTTTGATAATTCAT
ATTATTCCGTTTACGAAAATAATAATGATTCAAAAAACAAAGATATTCCGGTAAGTTTTTATAGTGTTGAACCAATGACC
ATTTATGAAGTACTAGATATCATTGAATTACAGTTTAAAATGCCTTACTACATGTCCGATATTCTTTCTTTAACTGAAGA
AGAGAAGAAACTCTACAATGACAGAAAAAAAATAACATTTGATGGTAGCTTAGATAATTTTTTTAAATATCTAGGTAAGG
TTTATGGTCTGGATATCGTTGTTGATGACTTCGATGCTTTAAAAGTCAGTTATTTTCAAACAAAGATGTATAGCTTAGAC
CAATTCATTGATGGTAACAAATCTTCGGCTTCTCTTTCTGTCGGCAGTGGTGCTACCTCTGGTGGTTTTTCTGCTTCATC
TGAGAGTTCTGTTGAAAGTGATACTTGGGAAAAAATTGAAAATTATTTAGATGATGTAGTCGGAGAAAATGGGAGTTCAA
CTATTTTAGAAGACTTTTCCCTTGTTAAAATTACTGCTAGGCCATGGATTATCTCAGAAGTCGATCAATTATTTGATAGA
TTGAAAGCTGAGAGTCAAATGCAAGTTTCTGTACAATATCGAATTATCAGTTTAAGCAAATCAAAATTGAGTCAATTAGC
TGCGAAGTTTGGTTTAGATTCAAAAGGTAATGACTTTACTATAACGAGTGAATTGGTTGATTCTGTCGCACTTAATGCTG
CTGGTGGTGGATTAAGTTTTGCGAAAAGGTCTGTAAGTGGAAGACTAGATGCAGTAGTCAAATATTTAGCTCAAGATGTC
GTTAGTGAAGGCCATTTCGTTGGATTACCAAATAGGATTATGCCGATAAATCTAACTACAACCTCATCGTATATTTCTGA
AGTAGAAAAAGTAGATAATGAAAATGTAGATAAGTCAACTACATCATTGAAAACGTCTGAAATTAAAACTGGCTTGAGCA
TGTTGATTTTACCAAAAGTTTTAGAGGATGGTCGGATTCAATTAACATCTGGTTTTACTAAGAAGCAGTTGATCGCGATG
GATACTGTAAGCGGCGTTCAATTACCAACAGTTGATGAGAATGAAACATTATCAACGGTAACTTTAGATTCAGGAGATGT
GGAATTAATAACCTTATATAAAGGAAATTCTAATAATTCAGCTCAAGCAGCTCAATTACTTGGTTTAGGTCAAACTTCAT
CTGAAGACGATCAAGTAATCGCGGTACTAATTGGTGCGGATAGTTACAAACTAGCTAGCTCTGTCTCGAAACGAGGATTA
TATGATAATAGATGA

Upstream 100 bases:

>100_bases
AATATATCTGATGATTTATCAGTAATGGGAATAGATATACATATGAATGTTTATATTAAAAATAATGTTGTTTTAGTTTA
TTCTGTTAGAGGTTAATACA

Downstream 100 bases:

>100_bases
CTTTGTTTGGTTACCAAAATCTGATCTTCTTATTGGTAAATTAGAAAAACTTGGTTGGAAAACATTGTTCAGTGTTAAAA
CTAATGATAACAATATATAT

Product: toxin coregulated pilus outer membrane protein TcpC

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpC [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKKKALILIISILSGCSSTNMSDKNENSLDLIVDKEIESRNLRTSNFSIFDNSYYSVYENNNDSKNKDIPVSFYSVEPMT
IYEVLDIIELQFKMPYYMSDILSLTEEEKKLYNDRKKITFDGSLDNFFKYLGKVYGLDIVVDDFDALKVSYFQTKMYSLD
QFIDGNKSSASLSVGSGATSGGFSASSESSVESDTWEKIENYLDDVVGENGSSTILEDFSLVKITARPWIISEVDQLFDR
LKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAAGGGLSFAKRSVSGRLDAVVKYLAQDV
VSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNENVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAM
DTVSGVQLPTVDENETLSTVTLDSGDVELITLYKGNSNNSAQAAQLLGLGQTSSEDDQVIAVLIGADSYKLASSVSKRGL
YDNR

Sequences:

>Translated_484_residues
MKKKALILIISILSGCSSTNMSDKNENSLDLIVDKEIESRNLRTSNFSIFDNSYYSVYENNNDSKNKDIPVSFYSVEPMT
IYEVLDIIELQFKMPYYMSDILSLTEEEKKLYNDRKKITFDGSLDNFFKYLGKVYGLDIVVDDFDALKVSYFQTKMYSLD
QFIDGNKSSASLSVGSGATSGGFSASSESSVESDTWEKIENYLDDVVGENGSSTILEDFSLVKITARPWIISEVDQLFDR
LKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAAGGGLSFAKRSVSGRLDAVVKYLAQDV
VSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNENVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAM
DTVSGVQLPTVDENETLSTVTLDSGDVELITLYKGNSNNSAQAAQLLGLGQTSSEDDQVIAVLIGADSYKLASSVSKRGL
YDNR
>Mature_484_residues
MKKKALILIISILSGCSSTNMSDKNENSLDLIVDKEIESRNLRTSNFSIFDNSYYSVYENNNDSKNKDIPVSFYSVEPMT
IYEVLDIIELQFKMPYYMSDILSLTEEEKKLYNDRKKITFDGSLDNFFKYLGKVYGLDIVVDDFDALKVSYFQTKMYSLD
QFIDGNKSSASLSVGSGATSGGFSASSESSVESDTWEKIENYLDDVVGENGSSTILEDFSLVKITARPWIISEVDQLFDR
LKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAAGGGLSFAKRSVSGRLDAVVKYLAQDV
VSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNENVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAM
DTVSGVQLPTVDENETLSTVTLDSGDVELITLYKGNSNNSAQAAQLLGLGQTSSEDDQVIAVLIGADSYKLASSVSKRGL
YDNR

Specific function: Involved in TCP pilus biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004846 [H]

Pfam domain/function: PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 53264; Mature: 53264

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKALILIISILSGCSSTNMSDKNENSLDLIVDKEIESRNLRTSNFSIFDNSYYSVYEN
CCCCCEEHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCEEEEEEC
NNDSKNKDIPVSFYSVEPMTIYEVLDIIELQFKMPYYMSDILSLTEEEKKLYNDRKKITF
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEE
DGSLDNFFKYLGKVYGLDIVVDDFDALKVSYFQTKMYSLDQFIDGNKSSASLSVGSGATS
CCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
GGFSASSESSVESDTWEKIENYLDDVVGENGSSTILEDFSLVKITARPWIISEVDQLFDR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHH
LKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAAGGGLSF
HCCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCCHHH
AKRSVSGRLDAVVKYLAQDVVSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNENVDKST
HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCHH
TSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAMDTVSGVQLPTVDENETLSTV
HHCCHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHEEEEECCCCCCCCCCCCCCCEEEE
TLDSGDVELITLYKGNSNNSAQAAQLLGLGQTSSEDDQVIAVLIGADSYKLASSVSKRGL
EECCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCC
YDNR
CCCC
>Mature Secondary Structure
MKKKALILIISILSGCSSTNMSDKNENSLDLIVDKEIESRNLRTSNFSIFDNSYYSVYEN
CCCCCEEHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCEEEEEEC
NNDSKNKDIPVSFYSVEPMTIYEVLDIIELQFKMPYYMSDILSLTEEEKKLYNDRKKITF
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEE
DGSLDNFFKYLGKVYGLDIVVDDFDALKVSYFQTKMYSLDQFIDGNKSSASLSVGSGATS
CCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
GGFSASSESSVESDTWEKIENYLDDVVGENGSSTILEDFSLVKITARPWIISEVDQLFDR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHH
LKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAAGGGLSF
HCCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCCHHH
AKRSVSGRLDAVVKYLAQDVVSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNENVDKST
HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCHH
TSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAMDTVSGVQLPTVDENETLSTV
HHCCHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHEEEEECCCCCCCCCCCCCCCEEEE
TLDSGDVELITLYKGNSNNSAQAAQLLGLGQTSSEDDQVIAVLIGADSYKLASSVSKRGL
EECCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCC
YDNR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1358749; 10952301; 8621096 [H]