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The map label for this gene is ybiT [H]

Identifier: 59713970

GI number: 59713970

Start: 883000

End: 884571

Strand: Reverse

Name: ybiT [H]

Synonym: VF_A0787

Alternate gene names: 59713970

Gene position: 884571-883000 (Counterclockwise)

Preceding gene: 59713971

Following gene: 59713969

Centisome position: 66.49

GC content: 40.27

Gene sequence:

>1572_bases
ATGCAATTTGGCGATAAGCCACTTTTTGAAAATATTTCTGTTAAGTTTGGTAACGGTAACCGTTACGGTTTAATCGGCGC
GAATGGCTGTGGTAAATCTACCTTTATGAAAATCTTGGGTGGAGAGTTGGAGCAATCAGCAGGTACAGTATCAACTGATC
CTAATGAGCGTATGGCTAAATTAGGTCAAGATCAGTTCGCATTTGAAGAATACACAGTAATTGACACTGTTATCATGGGT
CATAAAGAACTGTGGAAAATCAAAGAAGAACGCGACCGTATCTATTCTTTACCAGAAATGTCTGATGAAGATGGTATGCG
TGTTGGTGATTTAGAAACTGAATTCGCTGAAATGGATGGTTACTCTGCTGAAGCTCGTGCGGGTGAACTTCTATTAGGTT
TAGGTCTTCCTGAATCACAACACTTTGGTTTAATGAGTGAAGTTGCTCCTGGTCTTAAAGTTCGTGTTCTTTTAGCACAA
GTTCTATTTGCAGAACCTGACATCATGCTTCTTGATGAACCAACGAACAACTTGGACATGCACACTATTGCGTGGTTAGA
AGATATCCTTCTTGCTCGTAACTGTACAATGATCATTATCTCGCACGACCGTCATTTCTTAAACTCAGTATGTACGCACA
TGGCTGACTTAGATTACGGTGAACTTTGCCTGTTCCCAGGTAACTACGATGAGTACATGACAGCAGCAGAACAAGCTCGT
GAACAACTTCAAGCAGATAATGCGAAGAAGAAAGCACAAATTGCTGACTTACAAACGTTCGTAAGCCGTTTCTCTGCAAA
CGCATCAAAAGCGAAACAAGCAACCTCTCGTCAAAAACAACTGGATAAAATTCAATTAACTGAGATCAAAGCATCAAGCC
GTCAATCTCCATTTATCCGTTTTGACCAAGAGAAACCACTTTTCCGTAATGCGTTAGAAGTGGAAGGTTTAAAACAAGGT
TACGGTGAAAACATTTTAATCAACGGTGTAAACCTAATGGTTGAAGTGGGTGAGCGTATCGCGATCATCGGTGAGAATGG
TATCGGTAAATCAACGTTCTTAAACACGTTAGCTGGTGCAATGGAACCAATGTCAGGCATGATCAAATGGTCTGAAAATA
ACAATATTGGTTTCTATGCTCAAGATCACGGTCACGACTTTGCAGAAGATCTAAACCTATTAGATTGGATGGGTCAGTGG
AAACAAGAAGGCGATGACGAACAAGTGGTTCGTGGCATTCTTGGTCGTATGCTTTTCTCTCAAAACGACATTAAGAAATC
AGTTAAAGTGATTTCTGGTGGTGAGCAAGGTCGTATGTTATTTGGTAAGCTGATCATGCAAAAGCCAAACATCCTTCTTA
TGGATGAACCAACAAACCACATGGATATGGAATCAATTGAAGCATTGAACTTGGCTCTAGAGAACTACAAAGGTACATTA
ATGTTTGTATCTCATGACCGTCAGTTCGTATCTTCAATTGCAACACGCATTATCGAAATCACAAAAGATGGCGTGAACGA
TTTCCACGGTACATACGAAGAATACCTAAAGAAACAAGGTCTTAAAGGCTAA

Upstream 100 bases:

>100_bases
TACTCCCCCTAAATTTGAAAAGCTGGTTTTTGTACCAGCTTTTTTCTGTCTCATTGATCAATAATTGGAATGTACTGTGC
TAACGACTGCTAACATCACA

Downstream 100 bases:

>100_bases
TTCCTGATTTTCTTTTAATCAAATTAAATGGAAGCGACTCATCGCTTCCATTTTTTTTGTTTTAAATTCGGCATTATCGA
AAAATGCTCACTTCTCGATT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MQFGDKPLFENISVKFGNGNRYGLIGANGCGKSTFMKILGGELEQSAGTVSTDPNERMAKLGQDQFAFEEYTVIDTVIMG
HKELWKIKEERDRIYSLPEMSDEDGMRVGDLETEFAEMDGYSAEARAGELLLGLGLPESQHFGLMSEVAPGLKVRVLLAQ
VLFAEPDIMLLDEPTNNLDMHTIAWLEDILLARNCTMIIISHDRHFLNSVCTHMADLDYGELCLFPGNYDEYMTAAEQAR
EQLQADNAKKKAQIADLQTFVSRFSANASKAKQATSRQKQLDKIQLTEIKASSRQSPFIRFDQEKPLFRNALEVEGLKQG
YGENILINGVNLMVEVGERIAIIGENGIGKSTFLNTLAGAMEPMSGMIKWSENNNIGFYAQDHGHDFAEDLNLLDWMGQW
KQEGDDEQVVRGILGRMLFSQNDIKKSVKVISGGEQGRMLFGKLIMQKPNILLMDEPTNHMDMESIEALNLALENYKGTL
MFVSHDRQFVSSIATRIIEITKDGVNDFHGTYEEYLKKQGLKG

Sequences:

>Translated_523_residues
MQFGDKPLFENISVKFGNGNRYGLIGANGCGKSTFMKILGGELEQSAGTVSTDPNERMAKLGQDQFAFEEYTVIDTVIMG
HKELWKIKEERDRIYSLPEMSDEDGMRVGDLETEFAEMDGYSAEARAGELLLGLGLPESQHFGLMSEVAPGLKVRVLLAQ
VLFAEPDIMLLDEPTNNLDMHTIAWLEDILLARNCTMIIISHDRHFLNSVCTHMADLDYGELCLFPGNYDEYMTAAEQAR
EQLQADNAKKKAQIADLQTFVSRFSANASKAKQATSRQKQLDKIQLTEIKASSRQSPFIRFDQEKPLFRNALEVEGLKQG
YGENILINGVNLMVEVGERIAIIGENGIGKSTFLNTLAGAMEPMSGMIKWSENNNIGFYAQDHGHDFAEDLNLLDWMGQW
KQEGDDEQVVRGILGRMLFSQNDIKKSVKVISGGEQGRMLFGKLIMQKPNILLMDEPTNHMDMESIEALNLALENYKGTL
MFVSHDRQFVSSIATRIIEITKDGVNDFHGTYEEYLKKQGLKG
>Mature_523_residues
MQFGDKPLFENISVKFGNGNRYGLIGANGCGKSTFMKILGGELEQSAGTVSTDPNERMAKLGQDQFAFEEYTVIDTVIMG
HKELWKIKEERDRIYSLPEMSDEDGMRVGDLETEFAEMDGYSAEARAGELLLGLGLPESQHFGLMSEVAPGLKVRVLLAQ
VLFAEPDIMLLDEPTNNLDMHTIAWLEDILLARNCTMIIISHDRHFLNSVCTHMADLDYGELCLFPGNYDEYMTAAEQAR
EQLQADNAKKKAQIADLQTFVSRFSANASKAKQATSRQKQLDKIQLTEIKASSRQSPFIRFDQEKPLFRNALEVEGLKQG
YGENILINGVNLMVEVGERIAIIGENGIGKSTFLNTLAGAMEPMSGMIKWSENNNIGFYAQDHGHDFAEDLNLLDWMGQW
KQEGDDEQVVRGILGRMLFSQNDIKKSVKVISGGEQGRMLFGKLIMQKPNILLMDEPTNHMDMESIEALNLALENYKGTL
MFVSHDRQFVSSIATRIIEITKDGVNDFHGTYEEYLKKQGLKG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=520, Percent_Identity=29.8076923076923, Blast_Score=254, Evalue=1e-67,
Organism=Homo sapiens, GI10947137, Length=532, Percent_Identity=29.3233082706767, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI27881506, Length=532, Percent_Identity=29.3233082706767, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI69354671, Length=526, Percent_Identity=29.8479087452471, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI10947135, Length=526, Percent_Identity=29.8479087452471, Blast_Score=203, Evalue=3e-52,
Organism=Escherichia coli, GI1787041, Length=522, Percent_Identity=73.3716475095785, Blast_Score=824, Evalue=0.0,
Organism=Escherichia coli, GI1789751, Length=514, Percent_Identity=32.1011673151751, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=31.3688212927757, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI1787182, Length=545, Percent_Identity=31.0091743119266, Blast_Score=222, Evalue=5e-59,
Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=26.3888888888889, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788225, Length=216, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1788165, Length=220, Percent_Identity=22.7272727272727, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787758, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=25.7510729613734, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789672, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1790739, Length=237, Percent_Identity=24.0506329113924, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786398, Length=219, Percent_Identity=26.9406392694064, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=530, Percent_Identity=30.377358490566, Blast_Score=247, Evalue=9e-66,
Organism=Caenorhabditis elegans, GI17553372, Length=523, Percent_Identity=29.8279158699809, Blast_Score=239, Evalue=4e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=534, Percent_Identity=28.2771535580524, Blast_Score=224, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6321121, Length=537, Percent_Identity=30.5400372439479, Blast_Score=244, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=31.4393939393939, Blast_Score=240, Evalue=4e-64,
Organism=Saccharomyces cerevisiae, GI6323278, Length=415, Percent_Identity=25.3012048192771, Blast_Score=119, Evalue=9e-28,
Organism=Saccharomyces cerevisiae, GI6325030, Length=423, Percent_Identity=24.113475177305, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6324314, Length=415, Percent_Identity=24.0963855421687, Blast_Score=105, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24666836, Length=523, Percent_Identity=30.9751434034417, Blast_Score=248, Evalue=7e-66,
Organism=Drosophila melanogaster, GI24642252, Length=533, Percent_Identity=30.7692307692308, Blast_Score=238, Evalue=9e-63,
Organism=Drosophila melanogaster, GI18859989, Length=533, Percent_Identity=30.7692307692308, Blast_Score=238, Evalue=9e-63,
Organism=Drosophila melanogaster, GI24641342, Length=525, Percent_Identity=27.2380952380952, Blast_Score=218, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58660; Mature: 58660

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFGDKPLFENISVKFGNGNRYGLIGANGCGKSTFMKILGGELEQSAGTVSTDPNERMAK
CCCCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHCCHHHHCCCCCCCCCHHHHHH
LGQDQFAFEEYTVIDTVIMGHKELWKIKEERDRIYSLPEMSDEDGMRVGDLETEFAEMDG
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCC
YSAEARAGELLLGLGLPESQHFGLMSEVAPGLKVRVLLAQVLFAEPDIMLLDEPTNNLDM
CCCCCCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
HTIAWLEDILLARNCTMIIISHDRHFLNSVCTHMADLDYGELCLFPGNYDEYMTAAEQAR
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
EQLQADNAKKKAQIADLQTFVSRFSANASKAKQATSRQKQLDKIQLTEIKASSRQSPFIR
HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEE
FDQEKPLFRNALEVEGLKQGYGENILINGVNLMVEVGERIAIIGENGIGKSTFLNTLAGA
ECCCCCHHHHHHHHHHHHHCCCCEEEEECHHEEEECCCEEEEEECCCCCHHHHHHHHHHH
MEPMSGMIKWSENNNIGFYAQDHGHDFAEDLNLLDWMGQWKQEGDDEQVVRGILGRMLFS
HCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
QNDIKKSVKVISGGEQGRMLFGKLIMQKPNILLMDEPTNHMDMESIEALNLALENYKGTL
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE
MFVSHDRQFVSSIATRIIEITKDGVNDFHGTYEEYLKKQGLKG
EEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQFGDKPLFENISVKFGNGNRYGLIGANGCGKSTFMKILGGELEQSAGTVSTDPNERMAK
CCCCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHCCHHHHCCCCCCCCCHHHHHH
LGQDQFAFEEYTVIDTVIMGHKELWKIKEERDRIYSLPEMSDEDGMRVGDLETEFAEMDG
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCC
YSAEARAGELLLGLGLPESQHFGLMSEVAPGLKVRVLLAQVLFAEPDIMLLDEPTNNLDM
CCCCCCCCCEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
HTIAWLEDILLARNCTMIIISHDRHFLNSVCTHMADLDYGELCLFPGNYDEYMTAAEQAR
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
EQLQADNAKKKAQIADLQTFVSRFSANASKAKQATSRQKQLDKIQLTEIKASSRQSPFIR
HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEE
FDQEKPLFRNALEVEGLKQGYGENILINGVNLMVEVGERIAIIGENGIGKSTFLNTLAGA
ECCCCCHHHHHHHHHHHHHCCCCEEEEECHHEEEECCCEEEEEECCCCCHHHHHHHHHHH
MEPMSGMIKWSENNNIGFYAQDHGHDFAEDLNLLDWMGQWKQEGDDEQVVRGILGRMLFS
HCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
QNDIKKSVKVISGGEQGRMLFGKLIMQKPNILLMDEPTNHMDMESIEALNLALENYKGTL
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE
MFVSHDRQFVSSIATRIIEITKDGVNDFHGTYEEYLKKQGLKG
EEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]