Click here to switch to the map view.

The map label for this gene is chrR [H]

Identifier: 59713948

GI number: 59713948

Start: 861034

End: 861717

Strand: Reverse

Name: chrR [H]

Synonym: VF_A0765

Alternate gene names: 59713948

Gene position: 861717-861034 (Counterclockwise)

Preceding gene: 59713949

Following gene: 59713947

Centisome position: 64.77

GC content: 38.01

Gene sequence:

>684_bases
ATGAATAAGATCACTTACCATCCCAAAGATGAGCTTTTGAGTTCTCATGCAAATGGTGATTTACCCGAATCATTAGCGGT
GGCTATTTCATTACACTGTGAATTATGTCCACAGTGTCAAAAGAAACTTGATGCTATTACCAATCGTCTTGCGAGCAAAA
CATGGGATTCAACAGGCAGTAAAGAAGAAAAAGATGCCAATGAGAAAGCAATTGACAGTGATGGTTTCGACTCTATGCTG
GCTAATATCATGGCATTAGAAATAGAGCCTACTCATTTAGCCCCAGAGCCTGTATACACATTATTTATTGATGATAAAGA
ATACCAGCTTCCTTACATTTTACATCGATACGACAACTTAAAATGGAACCATTTAGGTGCAGTGAGTCGAACTCGTTTAA
ATGAGGAACAAGACACTCGGTCTAACTTGCTTCATATTAAGCCCGGTGGTGAAATTCCTCATCATACTCACAAAGGATTT
GAGTTAACCCTATTACTCGATGGCAGCTTTGAAGATGAATCCGGTCATTATCAAAAAGGGGATTTTATTTGGCTAGACGC
ATCAAATAGTCACAGCCCTAAAACGTCAGAAGGTTGTTTGTGTTACACGGTTCAAAATGCACCACTATACTTTAAACAAG
GGCTAAGTAAGTTATTCAATCCAATTGGAAATTTATTGTATTAG

Upstream 100 bases:

>100_bases
CTAACTCAGCAAGAGTTATCTGAACAGCTTGCAGAGCCAATAGGAACGATAAAATCTCGATTACGCTTAGCGTTAACTAA
ATTGCGTCAGGAGTATGAGC

Downstream 100 bases:

>100_bases
CAACCATACTTAAATAATGAATATAAAAGATCACAGGATGTGATCTTTTATATTTCACTAAGCGTATATAGGTGTATGAC
TAAGATAAAAGGAAGTACAG

Product: zinc-binding anti-sigmaE4 factor ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNKITYHPKDELLSSHANGDLPESLAVAISLHCELCPQCQKKLDAITNRLASKTWDSTGSKEEKDANEKAIDSDGFDSML
ANIMALEIEPTHLAPEPVYTLFIDDKEYQLPYILHRYDNLKWNHLGAVSRTRLNEEQDTRSNLLHIKPGGEIPHHTHKGF
ELTLLLDGSFEDESGHYQKGDFIWLDASNSHSPKTSEGCLCYTVQNAPLYFKQGLSKLFNPIGNLLY

Sequences:

>Translated_227_residues
MNKITYHPKDELLSSHANGDLPESLAVAISLHCELCPQCQKKLDAITNRLASKTWDSTGSKEEKDANEKAIDSDGFDSML
ANIMALEIEPTHLAPEPVYTLFIDDKEYQLPYILHRYDNLKWNHLGAVSRTRLNEEQDTRSNLLHIKPGGEIPHHTHKGF
ELTLLLDGSFEDESGHYQKGDFIWLDASNSHSPKTSEGCLCYTVQNAPLYFKQGLSKLFNPIGNLLY
>Mature_227_residues
MNKITYHPKDELLSSHANGDLPESLAVAISLHCELCPQCQKKLDAITNRLASKTWDSTGSKEEKDANEKAIDSDGFDSML
ANIMALEIEPTHLAPEPVYTLFIDDKEYQLPYILHRYDNLKWNHLGAVSRTRLNEEQDTRSNLLHIKPGGEIPHHTHKGF
ELTLLLDGSFEDESGHYQKGDFIWLDASNSHSPKTSEGCLCYTVQNAPLYFKQGLSKLFNPIGNLLY

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25640; Mature: 25640

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKITYHPKDELLSSHANGDLPESLAVAISLHCELCPQCQKKLDAITNRLASKTWDSTGS
CCCCCCCCHHHHHHHCCCCCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
KEEKDANEKAIDSDGFDSMLANIMALEIEPTHLAPEPVYTLFIDDKEYQLPYILHRYDNL
CCHHCCCHHCCCCCCHHHHHHHHEEEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCCC
KWNHLGAVSRTRLNEEQDTRSNLLHIKPGGEIPHHTHKGFELTLLLDGSFEDESGHYQKG
CCHHCCCHHHHHCCCCHHHHHCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECC
DFIWLDASNSHSPKTSEGCLCYTVQNAPLYFKQGLSKLFNPIGNLLY
CEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKITYHPKDELLSSHANGDLPESLAVAISLHCELCPQCQKKLDAITNRLASKTWDSTGS
CCCCCCCCHHHHHHHCCCCCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
KEEKDANEKAIDSDGFDSMLANIMALEIEPTHLAPEPVYTLFIDDKEYQLPYILHRYDNL
CCHHCCCHHCCCCCCHHHHHHHHEEEEECCCCCCCCCEEEEEECCCCCCCCCCEECCCCC
KWNHLGAVSRTRLNEEQDTRSNLLHIKPGGEIPHHTHKGFELTLLLDGSFEDESGHYQKG
CCHHCCCHHHHHCCCCHHHHHCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEECC
DFIWLDASNSHSPKTSEGCLCYTVQNAPLYFKQGLSKLFNPIGNLLY
CEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]