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The map label for this gene is ypdD [C]

Identifier: 59713894

GI number: 59713894

Start: 797847

End: 798632

Strand: Reverse

Name: ypdD [C]

Synonym: VF_A0711

Alternate gene names: 59713894

Gene position: 798632-797847 (Counterclockwise)

Preceding gene: 59713895

Following gene: 172087812

Centisome position: 60.03

GC content: 39.06

Gene sequence:

>786_bases
ATGGAGCTTAATACTATCGATTACCGAATTACTTTTTTTGTAAAAGATCAGGGCTTGCCACCTCAAGTTGCAAGTCAATT
AACCCGTCTTGCTAAAAAGTTTAAGAGTTTGGTTTATATCGATAATATTACTCAAAATCGAAGCACAAACGCTGAAAGTT
CATTGGGGTTACTTCAAGTAGGTCTGTGTCCTGGTGATTTTTGTCAATTAATCACCGTGGGTATGGATGCGGAGTGGGCC
AATTTTGTTTTAACGGATTTATTGTCGTCGACGTTTGATTTTGTTGCTTCAGATAAATTGTGTGATTTCTCAGAAACCAT
TACCAATACTTACCCTCAATTAACCCCTCAGTGTGAGGTGGATTTCCACTACGTAAAAGCGCAAGCCGTACTGTCTAAGT
TTGAAATCCTAAAAGGTTTGTCTCAACTTATTTATCCAAAAGAATCTGATGAGCTATTGCTTGCATTGATAAAGCGTGAA
GAGCGTTCATCGACTGCAATGGCAAAACAGATCGCGCTACCACATGTTATTTCCCCTTATGTAGAAAAACCGACAATCGC
CATTATTCGCAGTGATTACCCAGTTGATTGGGCATCCAAAATGGGGGATGTGAATGTCATTATTGCTTTGGTGCTTCCTG
AAAAGCCAACCAAAGAGATGATCATGGCTGCGACGTATTTAACGCGGAGTTTATTATCTGAGGATTTCAGTCAAAGATTG
GTACATACAAGGCAACCTAAAGGACTTCAAGCTTTGATCTTATATGCAATGTGTCAATTATTGTAA

Upstream 100 bases:

>100_bases
TTGAAGATAAAAATCGTTTTTTAGGAATTAATTCAAAACAATTCCCAATTGAAACCATATTAACGGATGTTGAAGGTATA
CTGAAAAAACACCTTTTCTA

Downstream 100 bases:

>100_bases
CGACAATAATGAATATTGCGGGCATAAAAAAGCTGACTTAACGACAACGCTAAGCCAGCATTCTGCTAGACCCTAGACCC
TAGACCCTAGACCCTAGACC

Product: PTS system, IIA component

Products: protein histidine; sugar phosphate

Alternate protein names: PTS System Fructose-Specific IIA Component; Fructocific Permease; PTS System IIA Component

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MELNTIDYRITFFVKDQGLPPQVASQLTRLAKKFKSLVYIDNITQNRSTNAESSLGLLQVGLCPGDFCQLITVGMDAEWA
NFVLTDLLSSTFDFVASDKLCDFSETITNTYPQLTPQCEVDFHYVKAQAVLSKFEILKGLSQLIYPKESDELLLALIKRE
ERSSTAMAKQIALPHVISPYVEKPTIAIIRSDYPVDWASKMGDVNVIIALVLPEKPTKEMIMAATYLTRSLLSEDFSQRL
VHTRQPKGLQALILYAMCQLL

Sequences:

>Translated_261_residues
MELNTIDYRITFFVKDQGLPPQVASQLTRLAKKFKSLVYIDNITQNRSTNAESSLGLLQVGLCPGDFCQLITVGMDAEWA
NFVLTDLLSSTFDFVASDKLCDFSETITNTYPQLTPQCEVDFHYVKAQAVLSKFEILKGLSQLIYPKESDELLLALIKRE
ERSSTAMAKQIALPHVISPYVEKPTIAIIRSDYPVDWASKMGDVNVIIALVLPEKPTKEMIMAATYLTRSLLSEDFSQRL
VHTRQPKGLQALILYAMCQLL
>Mature_261_residues
MELNTIDYRITFFVKDQGLPPQVASQLTRLAKKFKSLVYIDNITQNRSTNAESSLGLLQVGLCPGDFCQLITVGMDAEWA
NFVLTDLLSSTFDFVASDKLCDFSETITNTYPQLTPQCEVDFHYVKAQAVLSKFEILKGLSQLIYPKESDELLLALIKRE
ERSSTAMAKQIALPHVISPYVEKPTIAIIRSDYPVDWASKMGDVNVIIALVLPEKPTKEMIMAATYLTRSLLSEDFSQRL
VHTRQPKGLQALILYAMCQLL

Specific function: Unknown

COG id: COG1762

COG function: function code GT; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.1.69

Molecular weight: Translated: 29348; Mature: 29348

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS51094 PTS_EIIA_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNTIDYRITFFVKDQGLPPQVASQLTRLAKKFKSLVYIDNITQNRSTNAESSLGLLQV
CCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEE
GLCPGDFCQLITVGMDAEWANFVLTDLLSSTFDFVASDKLCDFSETITNTYPQLTPQCEV
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCC
DFHYVKAQAVLSKFEILKGLSQLIYPKESDELLLALIKREERSSTAMAKQIALPHVISPY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VEKPTIAIIRSDYPVDWASKMGDVNVIIALVLPEKPTKEMIMAATYLTRSLLSEDFSQRL
HCCCEEEEEECCCCCCHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VHTRQPKGLQALILYAMCQLL
HHCCCCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MELNTIDYRITFFVKDQGLPPQVASQLTRLAKKFKSLVYIDNITQNRSTNAESSLGLLQV
CCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEE
GLCPGDFCQLITVGMDAEWANFVLTDLLSSTFDFVASDKLCDFSETITNTYPQLTPQCEV
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCC
DFHYVKAQAVLSKFEILKGLSQLIYPKESDELLLALIKREERSSTAMAKQIALPHVISPY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VEKPTIAIIRSDYPVDWASKMGDVNVIIALVLPEKPTKEMIMAATYLTRSLLSEDFSQRL
HCCCEEEEEECCCCCCHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VHTRQPKGLQALILYAMCQLL
HHCCCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: protein N(pi)-phosphohistidine; sugar

Specific reaction: protein N(pi)-phosphohistidine + sugar = protein histidine + sugar phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA