Click here to switch to the map view.

The map label for this gene is 59713808

Identifier: 59713808

GI number: 59713808

Start: 704117

End: 704566

Strand: Reverse

Name: 59713808

Synonym: VF_A0625

Alternate gene names: NA

Gene position: 704566-704117 (Counterclockwise)

Preceding gene: 59713809

Following gene: 59713807

Centisome position: 52.96

GC content: 33.78

Gene sequence:

>450_bases
ATGAGTCATTATACAAAATTAATATTTACATTCTTTTTATGGTTAGGTTTACTCACACCTGCTTTTTCAGTTGAGCCTGT
AAACAGTGACTTTTTCGGTAAAGCTATCAAAGGGTATGATCCCGTCGCATACTTTACAGAAAGCCAAGCTATAAAAGGTA
ACAAAAATATTACTTACAAATGGAATGGTTCAAAATGGTACTTTTGTTCACAAAACAATCTTAAACTATTTGTATCTAAT
CCTACAATATATGCACCTCAATATGGTGGTTACTGCGCGTGGGCCGTGAGTGAAGGTTATACAGCAAAAATAGACCCTAA
TGCTTGGGATATTTTTGAAGGTAAGCTGTACCTTAATTATAGTAAATCAGTCCAAAAGACTTGGAGAAAAGACATCAAAG
GTAATGTTGTTAAAGCTGATGTAAATTGGCCTAAATTACTAATGGAATGA

Upstream 100 bases:

>100_bases
ACAGGTGTTCCTCACATTAAAATGGTCAAATGTTGTTAGCCGTTATGTAATTCCTAAAATTTTTATTTAGTTTATCGATT
CGTTAAATCAGGGAGTTAAT

Downstream 100 bases:

>100_bases
AGTCACATAACAAATGAATTAACAGGTTTTGCTGCATTCTAATTCCTTTGTGTTTACCGTATTTAGTGGTAAGTTTGCAT
GGCAGAAAACGTATTATATA

Product: hypothetical protein

Products: NA

Alternate protein names: YHS Domain-Containing Protein; YHS Domain Family; Tat Pathway Signal Sequence Domain Protein

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSHYTKLIFTFFLWLGLLTPAFSVEPVNSDFFGKAIKGYDPVAYFTESQAIKGNKNITYKWNGSKWYFCSQNNLKLFVSN
PTIYAPQYGGYCAWAVSEGYTAKIDPNAWDIFEGKLYLNYSKSVQKTWRKDIKGNVVKADVNWPKLLME

Sequences:

>Translated_149_residues
MSHYTKLIFTFFLWLGLLTPAFSVEPVNSDFFGKAIKGYDPVAYFTESQAIKGNKNITYKWNGSKWYFCSQNNLKLFVSN
PTIYAPQYGGYCAWAVSEGYTAKIDPNAWDIFEGKLYLNYSKSVQKTWRKDIKGNVVKADVNWPKLLME
>Mature_148_residues
SHYTKLIFTFFLWLGLLTPAFSVEPVNSDFFGKAIKGYDPVAYFTESQAIKGNKNITYKWNGSKWYFCSQNNLKLFVSNP
TIYAPQYGGYCAWAVSEGYTAKIDPNAWDIFEGKLYLNYSKSVQKTWRKDIKGNVVKADVNWPKLLME

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17188; Mature: 17057

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHYTKLIFTFFLWLGLLTPAFSVEPVNSDFFGKAIKGYDPVAYFTESQAIKGNKNITYK
CCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHCCCCCEEEEECCCEECCCCEEEEE
WNGSKWYFCSQNNLKLFVSNPTIYAPQYGGYCAWAVSEGYTAKIDPNAWDIFEGKLYLNY
ECCCEEEEECCCCEEEEECCCEEECCCCCCEEEEEECCCEEEEECCCCEEEEECEEEEEE
SKSVQKTWRKDIKGNVVKADVNWPKLLME
CHHHHHHHHHCCCCCEEEEECCCCHHHCC
>Mature Secondary Structure 
SHYTKLIFTFFLWLGLLTPAFSVEPVNSDFFGKAIKGYDPVAYFTESQAIKGNKNITYK
CHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHCCCCCEEEEECCCEECCCCEEEEE
WNGSKWYFCSQNNLKLFVSNPTIYAPQYGGYCAWAVSEGYTAKIDPNAWDIFEGKLYLNY
ECCCEEEEECCCCEEEEECCCEEECCCCCCEEEEEECCCEEEEECCCCEEEEECEEEEEE
SKSVQKTWRKDIKGNVVKADVNWPKLLME
CHHHHHHHHHCCCCCEEEEECCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA