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The map label for this gene is cspA [H]

Identifier: 59713778

GI number: 59713778

Start: 678438

End: 678644

Strand: Reverse

Name: cspA [H]

Synonym: VF_A0595

Alternate gene names: 59713778

Gene position: 678644-678438 (Counterclockwise)

Preceding gene: 59713781

Following gene: 59713776

Centisome position: 51.01

GC content: 40.1

Gene sequence:

>207_bases
ATGGCTAAAGCAACTGGTACTGTTAAATGGTTTAACGAAGAAAAAGGTTTTGGTTTTATTGCTCAAGAGAATGGACCTGA
TGTGTTCGCTCACTTTAGCCAAATTCAATCAGAAGGCTTCAAAACGTTAAAAGAAGGCCAAGCAGTGTCTTTCGATGTTG
AGCAAGGTCAAAAAGGCCCGCAAGCAGCTAATATCGTAGCTCTTTAA

Upstream 100 bases:

>100_bases
TTTATGAAACTACTTTTGTTATAGTGAAATTCGGTAATGGATACCGAAGCGACAAATGTGTCACTAGTAAACTCAAATTT
TTAAGGTTTAAGGAAACATC

Downstream 100 bases:

>100_bases
TAATACAGAATTAATAAAAAAGGCCCTCTAGGTGACTAGTTAGGGCCTTTTTTTCATTTTGAACAAAAGTTAACGACGTA
GAGAACGTGTTTTTAATTCA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MAKATGTVKWFNEEKGFGFIAQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQKGPQAANIVAL

Sequences:

>Translated_68_residues
MAKATGTVKWFNEEKGFGFIAQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQKGPQAANIVAL
>Mature_67_residues
AKATGTVKWFNEEKGFGFIAQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQKGPQAANIVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=63.768115942029, Blast_Score=92, Evalue=9e-21,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=61.1940298507463, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=62.3188405797101, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=59.7014925373134, Blast_Score=86, Evalue=3e-19,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=62.6865671641791, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=58.4615384615385, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=60.9375, Blast_Score=80, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7361; Mature: 7230

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKATGTVKWFNEEKGFGFIAQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQKGP
CCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
QAANIVAL
CCCEEEEC
>Mature Secondary Structure 
AKATGTVKWFNEEKGFGFIAQENGPDVFAHFSQIQSEGFKTLKEGQAVSFDVEQGQKGP
CCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
QAANIVAL
CCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]