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The map label for this gene is rtn [H]

Identifier: 59713734

GI number: 59713734

Start: 635125

End: 635925

Strand: Reverse

Name: rtn [H]

Synonym: VF_A0551

Alternate gene names: 59713734

Gene position: 635925-635125 (Counterclockwise)

Preceding gene: 59713735

Following gene: 59713733

Centisome position: 47.8

GC content: 35.96

Gene sequence:

>801_bases
ATGCTATTGGCAACACAGGACGAGTTTCAAACTCATTTATTCATTGATGACGCAGGTTCATATTGCGCTCAATATGACGG
CTTCATTTTGAGAAGTGTTTTCCAACCAATATTTGATAAACAAATGAATATTTTTGGTTATGAAGCATTACTTAGAATTC
AAGACTCAAATGATCAACCAATCAGACCTGACCTTTTCTTTTCGGACTTATCTCGCACTTTAGAACAGATACTAAATATC
GAGCGCTTAAGCCGTGTTATTCATATTCGAAATTTTTCTACCTTTGCTCCATTAGGTTGCAAACTGTTTTTAAATGTTTT
ACCTGAATCCGCAGTCCTTCTTTATACCAGTCATTTACCTGATATAAATGCAATGCTATTAGAGTCACGGATCAGTGCTT
TAAACCTATCTCCACAAAACATTGTATTTGAATTAGTAGAGTTTCATTATCAAGATGAAAAGAGACTAATCAATGCTATT
GAAATGATCAAAAAACACGATTTTTTTGTCGCTATTGACGATTATGGCTCGGAAGCCTCTTCCGCGCAGAGAGTTTCACA
ATTAAACCCAAACGTCATTAAAATCGATAGAGAGCTACTATTAAAGTATGAAGGTGGTATCAAAGCCCCTCTGTTATCCG
CCCTTTCTATCGCCAAAAAACAGGAGGCATTAACTATTGTTGAAGGCGTTGAAACACCTCATCAGTATGAGTTAATGAAA
AAACTAAATATTGGTTATTTCCAAGGCTTTTTGCTTGGAAAACCCCTACCTTTACACGAACAAAATCATCAAGCGGCTTA
A

Upstream 100 bases:

>100_bases
GAAACACTTAATCTGTGATTTCACTCGATTTTTCCTTTTCGTTCATTTGCTTAATTTAATTGATTCAGATATCAATACTG
GAACGTATAAGGAGTTACGA

Downstream 100 bases:

>100_bases
CCCTTCTTAATGAGTAGCAGATTAATGTATATTAGTCTGTTACTCAAAAATCACTTGTAAAATTTATATTCTCATATTGA
TTCCTATATTGAGGATAGCC

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MLLATQDEFQTHLFIDDAGSYCAQYDGFILRSVFQPIFDKQMNIFGYEALLRIQDSNDQPIRPDLFFSDLSRTLEQILNI
ERLSRVIHIRNFSTFAPLGCKLFLNVLPESAVLLYTSHLPDINAMLLESRISALNLSPQNIVFELVEFHYQDEKRLINAI
EMIKKHDFFVAIDDYGSEASSAQRVSQLNPNVIKIDRELLLKYEGGIKAPLLSALSIAKKQEALTIVEGVETPHQYELMK
KLNIGYFQGFLLGKPLPLHEQNHQAA

Sequences:

>Translated_266_residues
MLLATQDEFQTHLFIDDAGSYCAQYDGFILRSVFQPIFDKQMNIFGYEALLRIQDSNDQPIRPDLFFSDLSRTLEQILNI
ERLSRVIHIRNFSTFAPLGCKLFLNVLPESAVLLYTSHLPDINAMLLESRISALNLSPQNIVFELVEFHYQDEKRLINAI
EMIKKHDFFVAIDDYGSEASSAQRVSQLNPNVIKIDRELLLKYEGGIKAPLLSALSIAKKQEALTIVEGVETPHQYELMK
KLNIGYFQGFLLGKPLPLHEQNHQAA
>Mature_266_residues
MLLATQDEFQTHLFIDDAGSYCAQYDGFILRSVFQPIFDKQMNIFGYEALLRIQDSNDQPIRPDLFFSDLSRTLEQILNI
ERLSRVIHIRNFSTFAPLGCKLFLNVLPESAVLLYTSHLPDINAMLLESRISALNLSPQNIVFELVEFHYQDEKRLINAI
EMIKKHDFFVAIDDYGSEASSAQRVSQLNPNVIKIDRELLLKYEGGIKAPLLSALSIAKKQEALTIVEGVETPHQYELMK
KLNIGYFQGFLLGKPLPLHEQNHQAA

Specific function: Involved in resistance to phages N4 and lambda [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1788502, Length=234, Percent_Identity=27.3504273504274, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081921, Length=235, Percent_Identity=24.6808510638298, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082096, Length=129, Percent_Identity=31.0077519379845, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790496, Length=233, Percent_Identity=27.8969957081545, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87081743, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 30385; Mature: 30385

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLATQDEFQTHLFIDDAGSYCAQYDGFILRSVFQPIFDKQMNIFGYEALLRIQDSNDQP
CCCCCCCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
IRPDLFFSDLSRTLEQILNIERLSRVIHIRNFSTFAPLGCKLFLNVLPESAVLLYTSHLP
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
DINAMLLESRISALNLSPQNIVFELVEFHYQDEKRLINAIEMIKKHDFFVAIDDYGSEAS
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCCHH
SAQRVSQLNPNVIKIDRELLLKYEGGIKAPLLSALSIAKKQEALTIVEGVETPHQYELMK
HHHHHHHCCCCEEEECHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KLNIGYFQGFLLGKPLPLHEQNHQAA
HHCCHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLATQDEFQTHLFIDDAGSYCAQYDGFILRSVFQPIFDKQMNIFGYEALLRIQDSNDQP
CCCCCCCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
IRPDLFFSDLSRTLEQILNIERLSRVIHIRNFSTFAPLGCKLFLNVLPESAVLLYTSHLP
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
DINAMLLESRISALNLSPQNIVFELVEFHYQDEKRLINAIEMIKKHDFFVAIDDYGSEAS
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCCHH
SAQRVSQLNPNVIKIDRELLLKYEGGIKAPLLSALSIAKKQEALTIVEGVETPHQYELMK
HHHHHHHCCCCEEEECHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KLNIGYFQGFLLGKPLPLHEQNHQAA
HHCCHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 9079933 [H]