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The map label for this gene is ykuM [H]

Identifier: 59713672

GI number: 59713672

Start: 563023

End: 563955

Strand: Reverse

Name: ykuM [H]

Synonym: VF_A0489

Alternate gene names: 59713672

Gene position: 563955-563023 (Counterclockwise)

Preceding gene: 59713675

Following gene: 59713671

Centisome position: 42.39

GC content: 35.48

Gene sequence:

>933_bases
ATGATTGATAACAAACGATTAATGAATGTCGATTTAAACCTCTTACTTCTATTACAAGTTTTAGGGAAAGAGAAAAATAC
GAGAAAAGCAGCAGAGCGCCTGTTTGTGACTCAATCAGCAATCAGTAAAGGCTTAAAAAAACTAAGAGAACAATTTGATA
ACGAGTTATTCATTAGTTCAAATAAAGGATTAGAAGCAACGCCTTTCTGCGAAGAAGTCCAATTAAAACTGCCTCGATTA
CTGGAAGAGTTAACATCACTCTATGACACTCACTCGAATAATGACTATGCTTCATATTCAGGTACGGTATCTATTGCCAT
TAATCCTTCGTTAACTTTTCCTTTCGCCGAGCTTATTCAAAACTATGTTCAAGAAAAACTTCCTAATGCCTCATTAGAAT
TAGTCAACTGGAGCTGGAACACCGAGTTACATATTAAAAAGCAGATGATCCACTTAGGAATCAACTATTATCCGCTCACA
TTAACGAAACATATTGTCCAACAACCCATAGCTGACGTTAAATTTAATTTATGTTTATCTACCGCACATCCGCTTCTTAA
CCAAGAGATAACAATGGAAAATATTGCTAAATACCCGTTAGTAATGAATCTCATGCCTGACTATGTTAAACAACAAAATC
ACGTAGAACGTTTACTCAAAGAAGCCAATTTAACTCCTAAGGTTGCACTGAAAAGTGACATTATGTCGGTTTGCCTATCT
ACTTTGGAAAAAACTGAAAGTGTTATGCCTATTCACAGTTTAATTCGCCCCTCCCTACCAAGTTCGTTAACTTTGGCTGA
ATTCTCTCCATCAATCGAAGCTTCTATCCCAAAAAATCAAATTGCCTTATATACCGCTAACTCATCGGAACAAACAATGA
TAAGCCGACAACTTGAAGATGATATAAAAGCTATTATTTTAAGTCTAAGTTGA

Upstream 100 bases:

>100_bases
TACCTAATGTTAAACAGGTATTGATTATAAAAAATACATTGCAGTTCCCACAGGGAATTATTAGACTCAAATCAATTCCA
TTTTAGACTTATTCAGAATT

Downstream 100 bases:

>100_bases
ATATGGTGGTTTTTATAAACACCAACTACAATTACTTAGAGTCGATAAAAAATGTGATATTTTTGGAAGAGTTATCTTCA
CCTAATTCAAATATGAGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MIDNKRLMNVDLNLLLLLQVLGKEKNTRKAAERLFVTQSAISKGLKKLREQFDNELFISSNKGLEATPFCEEVQLKLPRL
LEELTSLYDTHSNNDYASYSGTVSIAINPSLTFPFAELIQNYVQEKLPNASLELVNWSWNTELHIKKQMIHLGINYYPLT
LTKHIVQQPIADVKFNLCLSTAHPLLNQEITMENIAKYPLVMNLMPDYVKQQNHVERLLKEANLTPKVALKSDIMSVCLS
TLEKTESVMPIHSLIRPSLPSSLTLAEFSPSIEASIPKNQIALYTANSSEQTMISRQLEDDIKAIILSLS

Sequences:

>Translated_310_residues
MIDNKRLMNVDLNLLLLLQVLGKEKNTRKAAERLFVTQSAISKGLKKLREQFDNELFISSNKGLEATPFCEEVQLKLPRL
LEELTSLYDTHSNNDYASYSGTVSIAINPSLTFPFAELIQNYVQEKLPNASLELVNWSWNTELHIKKQMIHLGINYYPLT
LTKHIVQQPIADVKFNLCLSTAHPLLNQEITMENIAKYPLVMNLMPDYVKQQNHVERLLKEANLTPKVALKSDIMSVCLS
TLEKTESVMPIHSLIRPSLPSSLTLAEFSPSIEASIPKNQIALYTANSSEQTMISRQLEDDIKAIILSLS
>Mature_310_residues
MIDNKRLMNVDLNLLLLLQVLGKEKNTRKAAERLFVTQSAISKGLKKLREQFDNELFISSNKGLEATPFCEEVQLKLPRL
LEELTSLYDTHSNNDYASYSGTVSIAINPSLTFPFAELIQNYVQEKLPNASLELVNWSWNTELHIKKQMIHLGINYYPLT
LTKHIVQQPIADVKFNLCLSTAHPLLNQEITMENIAKYPLVMNLMPDYVKQQNHVERLLKEANLTPKVALKSDIMSVCLS
TLEKTESVMPIHSLIRPSLPSSLTLAEFSPSIEASIPKNQIALYTANSSEQTMISRQLEDDIKAIILSLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35094; Mature: 35094

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDNKRLMNVDLNLLLLLQVLGKEKNTRKAAERLFVTQSAISKGLKKLREQFDNELFISS
CCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
NKGLEATPFCEEVQLKLPRLLEELTSLYDTHSNNDYASYSGTVSIAINPSLTFPFAELIQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCHHHHHH
NYVQEKLPNASLELVNWSWNTELHIKKQMIHLGINYYPLTLTKHIVQQPIADVKFNLCLS
HHHHHHCCCCCEEEEEECCCCEEHHHHHHHHHCCCEEHHHHHHHHHHCCHHHHHHHHHHH
TAHPLLNQEITMENIAKYPLVMNLMPDYVKQQNHVERLLKEANLTPKVALKSDIMSVCLS
HHHHHHCCCCCHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TLEKTESVMPIHSLIRPSLPSSLTLAEFSPSIEASIPKNQIALYTANSSEQTMISRQLED
HHHHHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
DIKAIILSLS
HHHHHHEECC
>Mature Secondary Structure
MIDNKRLMNVDLNLLLLLQVLGKEKNTRKAAERLFVTQSAISKGLKKLREQFDNELFISS
CCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
NKGLEATPFCEEVQLKLPRLLEELTSLYDTHSNNDYASYSGTVSIAINPSLTFPFAELIQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCHHHHHH
NYVQEKLPNASLELVNWSWNTELHIKKQMIHLGINYYPLTLTKHIVQQPIADVKFNLCLS
HHHHHHCCCCCEEEEEECCCCEEHHHHHHHHHCCCEEHHHHHHHHHHCCHHHHHHHHHHH
TAHPLLNQEITMENIAKYPLVMNLMPDYVKQQNHVERLLKEANLTPKVALKSDIMSVCLS
HHHHHHCCCCCHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TLEKTESVMPIHSLIRPSLPSSLTLAEFSPSIEASIPKNQIALYTANSSEQTMISRQLED
HHHHHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
DIKAIILSLS
HHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]