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The map label for this gene is ycbC [H]

Identifier: 59713611

GI number: 59713611

Start: 489252

End: 490115

Strand: Reverse

Name: ycbC [H]

Synonym: VF_A0428

Alternate gene names: 59713611

Gene position: 490115-489252 (Counterclockwise)

Preceding gene: 59713618

Following gene: 59713605

Centisome position: 36.84

GC content: 38.66

Gene sequence:

>864_bases
ATGTTTGAGTTAAAGAAGTTTTTATCATCCATGTTAATGCCCCTACCAGGTTTTCTCCTAATAGGGTTCATTGGATTATT
AATTTTATGGTTTTCAAAAAGGAAAGGATTTGCCTCTTTTTTATTAACTTTATCTCTTTTGGGTATTTTTCTGCTCTCTT
TTCAACCAATCACAACACCATTATTAAAATCGACTGAACGAATTTATCCTTCGTTTATTGCGCCAGAGACGCCAGTTGAG
TACGTACTTGTTCTTGGTAATGGTCACGTTGTAGATGACGAAATATCTCCTATTTCAGAGCTGTCGAGAGCAGCAGTAAT
GAGATTAACTGAAGGGATCCGTATATATCGTATGTATCCTGGTTCTAAAATGATTCTTTCAGGTTATAACGGTGGAACAA
CGGTAAGTCACGCGCGTATGATGGCTCGTGTTGCTCTGTCTTTAGGTGTCCAGAAATCGGATATTTTACTGTTAGAAAGC
GCACGAGACACACACGAAGAAGCCATTCAAACCTTCAATTCGGTAGGTAAAAGCACACTTGTATTGGTTACTTCTGCGAG
TCATATGCCAAGAGCGATGTCTGAATTCCATCAGTTAGGTATGGATCCAGTTCCTGCACCAACCAACTATCTTGCCCATT
CAGAGGTTAAACAACCTTGGGATAAGTACGCACCTAAAGCAAAATATTTAGAGCAAAGTGAACGTTTCTGGTATGAGCAA
ATGGGCCGTTGGTTTATGCAGTTAAAAGATTTAGTGATGAAGAAAGAGCAACAAGCTCAAGAGACGCCTAAACTTGAAAT
TGAAGATGTCATGGAAAAAGTAGACGAATTAAAAGATTCCCTACCTTTATCTGACGAAAAATAA

Upstream 100 bases:

>100_bases
GCATTGTCGCATAAGAGCTCAAGGAAGTAACAGCATGACGCTGTTTTTTGTTCTCAAGTGGTGATTTTTCATTCTATATC
AGCGGTAATAGTTAAAAAAT

Downstream 100 bases:

>100_bases
AAACGTATACAAATAAAAAAGCACATACTGTTTAAAACGGTATGTGCTTTTTTTATATAAAATTGATATTACTTGGATAG
AATCGCGCGCACTTTTTCTA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MFELKKFLSSMLMPLPGFLLIGFIGLLILWFSKRKGFASFLLTLSLLGIFLLSFQPITTPLLKSTERIYPSFIAPETPVE
YVLVLGNGHVVDDEISPISELSRAAVMRLTEGIRIYRMYPGSKMILSGYNGGTTVSHARMMARVALSLGVQKSDILLLES
ARDTHEEAIQTFNSVGKSTLVLVTSASHMPRAMSEFHQLGMDPVPAPTNYLAHSEVKQPWDKYAPKAKYLEQSERFWYEQ
MGRWFMQLKDLVMKKEQQAQETPKLEIEDVMEKVDELKDSLPLSDEK

Sequences:

>Translated_287_residues
MFELKKFLSSMLMPLPGFLLIGFIGLLILWFSKRKGFASFLLTLSLLGIFLLSFQPITTPLLKSTERIYPSFIAPETPVE
YVLVLGNGHVVDDEISPISELSRAAVMRLTEGIRIYRMYPGSKMILSGYNGGTTVSHARMMARVALSLGVQKSDILLLES
ARDTHEEAIQTFNSVGKSTLVLVTSASHMPRAMSEFHQLGMDPVPAPTNYLAHSEVKQPWDKYAPKAKYLEQSERFWYEQ
MGRWFMQLKDLVMKKEQQAQETPKLEIEDVMEKVDELKDSLPLSDEK
>Mature_287_residues
MFELKKFLSSMLMPLPGFLLIGFIGLLILWFSKRKGFASFLLTLSLLGIFLLSFQPITTPLLKSTERIYPSFIAPETPVE
YVLVLGNGHVVDDEISPISELSRAAVMRLTEGIRIYRMYPGSKMILSGYNGGTTVSHARMMARVALSLGVQKSDILLLES
ARDTHEEAIQTFNSVGKSTLVLVTSASHMPRAMSEFHQLGMDPVPAPTNYLAHSEVKQPWDKYAPKAKYLEQSERFWYEQ
MGRWFMQLKDLVMKKEQQAQETPKLEIEDVMEKVDELKDSLPLSDEK

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787150, Length=259, Percent_Identity=40.9266409266409, Blast_Score=165, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 32541; Mature: 32541

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELKKFLSSMLMPLPGFLLIGFIGLLILWFSKRKGFASFLLTLSLLGIFLLSFQPITTP
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH
LLKSTERIYPSFIAPETPVEYVLVLGNGHVVDDEISPISELSRAAVMRLTEGIRIYRMYP
HHHHHHHHCHHHCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
GSKMILSGYNGGTTVSHARMMARVALSLGVQKSDILLLESARDTHEEAIQTFNSVGKSTL
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEE
VLVTSASHMPRAMSEFHQLGMDPVPAPTNYLAHSEVKQPWDKYAPKAKYLEQSERFWYEQ
EEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHH
MGRWFMQLKDLVMKKEQQAQETPKLEIEDVMEKVDELKDSLPLSDEK
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFELKKFLSSMLMPLPGFLLIGFIGLLILWFSKRKGFASFLLTLSLLGIFLLSFQPITTP
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH
LLKSTERIYPSFIAPETPVEYVLVLGNGHVVDDEISPISELSRAAVMRLTEGIRIYRMYP
HHHHHHHHCHHHCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
GSKMILSGYNGGTTVSHARMMARVALSLGVQKSDILLLESARDTHEEAIQTFNSVGKSTL
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEE
VLVTSASHMPRAMSEFHQLGMDPVPAPTNYLAHSEVKQPWDKYAPKAKYLEQSERFWYEQ
EEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHH
MGRWFMQLKDLVMKKEQQAQETPKLEIEDVMEKVDELKDSLPLSDEK
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]