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The map label for this gene is ygjI [H]

Identifier: 59713523

GI number: 59713523

Start: 376622

End: 378046

Strand: Reverse

Name: ygjI [H]

Synonym: VF_A0340

Alternate gene names: 59713523

Gene position: 378046-376622 (Counterclockwise)

Preceding gene: 59713524

Following gene: 59713522

Centisome position: 28.42

GC content: 40.42

Gene sequence:

>1425_bases
ATGTCTGAATCTGTACGAGGCACAATAGGTAAGTTTGCCTTGCTGTCTATGACAATGGCCGCCGTTTTTAACGTGCGTAA
CATTGTAAATAACAATATTGAGTTGGGATTAAGCTCTGCCCCTATCTTTTTGCTCGCCACTATCGTTTACTTTATCCCAT
TCGTTTTTATTATTGCCGAATTTGTATCAGCAAATAAAAACTCTGAATCAGGCATGTATGATTGGCTAAAACAACCTCTA
GGTACAAAAATGGCCTACTTAGGTTCATTCTTGTACTGGTTTGTAAATTTATTTTGGTTTGTTTCCCTACTTCCGAACGT
TATCGCTTACGCTTCATACGCTATGCTAGGGTATGAATATTCTTTCTCTCCAATGGTGACATCAATTATTTCGATTGTTC
TCTTTGCTGCTGCAACTCATATTTCAACGAAAGGAGCGACGTGGCTAGGGAAAATATCAGAAATGGTTGCTTATGGCGTA
TTTGCCCTGTTTGGTATCTATGTCATTGGTGCATTAATGGCGCTTGGTGGCGATCATACCCCTGCTCAACCAATTACGAT
GGAAGCAATGACACCAACCATTAACTGGGCAACACTTGGTATTATGTGCTGGATCTTCCAGGCTGCTGGTGGTGCAGAAA
CCGCTGCGGCTTACTTAAAAGACGTAAAGGGTGGCCAAAAAACCTTTATTAAAGTCATTATCGCAGCGGGTATCTTAATT
GGTGTTATGTACGCTGTTGGCTCTTTACTTGTAAATGTGTTCATTCCACGTGAAAGCTTAACGTATGCTGGTGGTATGGT
TGAAATCTTTACAGGTATGGCTCAGTACTTCAATATTTCTGAAGCTCTAGTCGGTCGTTTTGTTGGTATCGTTCTATTCA
TCGCAATGTTTGGTTCAATGATGATGTGGACTGCAGCACCAGTTAAAATCCACTTTTCTGAAATTCCAAAAGGTGTCTAT
GGTGAAAAAACAACGGAGTTAAATGAGCATGGTGTTCCTGTTCGCGCAGCTTGGTGGCAATTTGCTTTTGTATTTGTCAT
GCTTGTTGTTAATGGATTTGGCTCTGAGTCAGTACAAGAGATGATGAATACTGCAATTAACCTAACTGCAGGTACTGCAA
TGCTACCGCCTATTTTCATCATGGTTGCCTACTTTGTTTTCCGTCTAAAATTTGATGATACACCTCGTGACTTCCGTATG
GGTTCTCGTCATTTCGGTATGGGTGTTGTATCTGTCCTTATTCTTATCTTTGTTGTAAGTATGACAGCTTCAGCTTTCCC
AACTGGTGTAGATTTAATGAAAGCCTTCTTTATTAATGTCTTTATGACGATGGTCTTCTCAGCTCTTGCTTACTGGTGGA
TATCTCGTTTCGAGAAAAAACAAGCAAAGAGTCAAGAGCTCAAAACAGCAACATCAACCAAGTAA

Upstream 100 bases:

>100_bases
CTCACAGTAACTTTTAGTAAAATTAATTACTATAATTTACTAAAAGTTACCTTACATACAAAAAATAACATTCACGCAAA
CAAATAGGAATGCAATAACT

Downstream 100 bases:

>100_bases
CACGAAACAAATTAGCATTTAGTTTCCCCTAGATATGACAAAAGGCACTGATAATATTCAGTGCCTTTTTTATTCAATCA
ATCTATACAGATACATATCA

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSESVRGTIGKFALLSMTMAAVFNVRNIVNNNIELGLSSAPIFLLATIVYFIPFVFIIAEFVSANKNSESGMYDWLKQPL
GTKMAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEYSFSPMVTSIISIVLFAAATHISTKGATWLGKISEMVAYGV
FALFGIYVIGALMALGGDHTPAQPITMEAMTPTINWATLGIMCWIFQAAGGAETAAAYLKDVKGGQKTFIKVIIAAGILI
GVMYAVGSLLVNVFIPRESLTYAGGMVEIFTGMAQYFNISEALVGRFVGIVLFIAMFGSMMMWTAAPVKIHFSEIPKGVY
GEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQEMMNTAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRM
GSRHFGMGVVSVLILIFVVSMTASAFPTGVDLMKAFFINVFMTMVFSALAYWWISRFEKKQAKSQELKTATSTK

Sequences:

>Translated_474_residues
MSESVRGTIGKFALLSMTMAAVFNVRNIVNNNIELGLSSAPIFLLATIVYFIPFVFIIAEFVSANKNSESGMYDWLKQPL
GTKMAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEYSFSPMVTSIISIVLFAAATHISTKGATWLGKISEMVAYGV
FALFGIYVIGALMALGGDHTPAQPITMEAMTPTINWATLGIMCWIFQAAGGAETAAAYLKDVKGGQKTFIKVIIAAGILI
GVMYAVGSLLVNVFIPRESLTYAGGMVEIFTGMAQYFNISEALVGRFVGIVLFIAMFGSMMMWTAAPVKIHFSEIPKGVY
GEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQEMMNTAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRM
GSRHFGMGVVSVLILIFVVSMTASAFPTGVDLMKAFFINVFMTMVFSALAYWWISRFEKKQAKSQELKTATSTK
>Mature_473_residues
SESVRGTIGKFALLSMTMAAVFNVRNIVNNNIELGLSSAPIFLLATIVYFIPFVFIIAEFVSANKNSESGMYDWLKQPLG
TKMAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEYSFSPMVTSIISIVLFAAATHISTKGATWLGKISEMVAYGVF
ALFGIYVIGALMALGGDHTPAQPITMEAMTPTINWATLGIMCWIFQAAGGAETAAAYLKDVKGGQKTFIKVIIAAGILIG
VMYAVGSLLVNVFIPRESLTYAGGMVEIFTGMAQYFNISEALVGRFVGIVLFIAMFGSMMMWTAAPVKIHFSEIPKGVYG
EKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQEMMNTAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRMG
SRHFGMGVVSVLILIFVVSMTASAFPTGVDLMKAFFINVFMTMVFSALAYWWISRFEKKQAKSQELKTATSTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI48994921, Length=471, Percent_Identity=55.8386411889597, Blast_Score=519, Evalue=1e-148,
Organism=Escherichia coli, GI87082380, Length=435, Percent_Identity=24.367816091954, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87081798, Length=434, Percent_Identity=22.3502304147465, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52205; Mature: 52074

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESVRGTIGKFALLSMTMAAVFNVRNIVNNNIELGLSSAPIFLLATIVYFIPFVFIIAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH
FVSANKNSESGMYDWLKQPLGTKMAYLGSFLYWFVNLFWFVSLLPNVIAYASYAMLGYEY
HHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SFSPMVTSIISIVLFAAATHISTKGATWLGKISEMVAYGVFALFGIYVIGALMALGGDHT
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PAQPITMEAMTPTINWATLGIMCWIFQAAGGAETAAAYLKDVKGGQKTFIKVIIAAGILI
CCCCEEEHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
GVMYAVGSLLVNVFIPRESLTYAGGMVEIFTGMAQYFNISEALVGRFVGIVLFIAMFGSM
HHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMWTAAPVKIHFSEIPKGVYGEKTTELNEHGVPVRAAWWQFAFVFVMLVVNGFGSESVQE
HHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
MMNTAINLTAGTAMLPPIFIMVAYFVFRLKFDDTPRDFRMGSRHFGMGVVSVLILIFVVS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
MTASAFPTGVDLMKAFFINVFMTMVFSALAYWWISRFEKKQAKSQELKTATSTK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SESVRGTIGKFALLSMTMAAVFNVRNIVNNNIELGLSSAPIFLLATIVYFIPFVFIIAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH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HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]