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The map label for this gene is yeaJ [H]

Identifier: 59713506

GI number: 59713506

Start: 355822

End: 356634

Strand: Reverse

Name: yeaJ [H]

Synonym: VF_A0323

Alternate gene names: 59713506

Gene position: 356634-355822 (Counterclockwise)

Preceding gene: 59713507

Following gene: 59713493

Centisome position: 26.81

GC content: 31.24

Gene sequence:

>813_bases
ATGATCATGACAAATAAGAAAATGCCCTTCATCGTTGTTACGATTCTCTTCATTTTTCTTTTTGTCTGTGTGTTTTTTTA
TAACGATATTGGGTTTGAGTCCTCATCAGATCTTGGTTTTGAAGGCTTAACTCTTATCTTGCTTACTTATATTTTTTTAA
CCACTGTTAACGCCTTCAAAAAATATCCATTTCTTCATGCTGGTGCTTGTCTTCTTTTATTTAATAAAGCTTATGACTTA
TTAACAGAGTTTCCTCAAATTGAATTTTATGCCGATCATTTTGAAGTTATAGATACCCTGTTAGATGATGGTTCTTTGTT
TATTGCGTTTTTACTCATTGCCGTTGGTATTACCCAAATGATGCAAATGTTAGCAAAACAAACCATGAAAGATGAACTCA
CAAATCTATATAATAGAAGGAAACTTTCTGAAATAAAGTTAACGGAATTTGACCTTATTTATTTTGATTTAAATGATTTA
AAAAAAGTGAATGACTTAAAAGGACATCAAGTTGGTGATTTGATGATCATTCGTTTTTCTCAAGCTCTTAGAAATGCATG
TCTTAAACAAGAAATGGCTTTTCGTGTCGGAGGAGATGAATTTATCGTAACTACTCATAAAGGTCGTTCAAGCGCGTTTA
TTAAACACATACATGAACAACTCTGTAATGAACAAATTTCTTTTGCTTATGGCATAAAAACATCAACTAAAGATGATTTA
GAAAACGCGCTAATTTGTTCCGATAAACGCATGTATAATATGAAAGAAGAGCAAAAAAAAGAGCACCCAAAAAAGTGCTC
TGATTCTATATAA

Upstream 100 bases:

>100_bases
TTATATTTCACAACAAATCAACGATAAAATCGCCTTCGCACCTTGTTTTTTATCGTAAACTAAGTTGTTATACTTAACAG
CACCCCATAAACAATGGTTA

Downstream 100 bases:

>100_bases
TTGAATTACTTTTTCAATTCTACGTCATCATTCATTAAACCCAACAATGCTTGGCTCGCTTGTTTTGGAGAAGAAGCATG
ACAAATTGCAGAAACCAAAG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: DGC [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIMTNKKMPFIVVTILFIFLFVCVFFYNDIGFESSSDLGFEGLTLILLTYIFLTTVNAFKKYPFLHAGACLLLFNKAYDL
LTEFPQIEFYADHFEVIDTLLDDGSLFIAFLLIAVGITQMMQMLAKQTMKDELTNLYNRRKLSEIKLTEFDLIYFDLNDL
KKVNDLKGHQVGDLMIIRFSQALRNACLKQEMAFRVGGDEFIVTTHKGRSSAFIKHIHEQLCNEQISFAYGIKTSTKDDL
ENALICSDKRMYNMKEEQKKEHPKKCSDSI

Sequences:

>Translated_270_residues
MIMTNKKMPFIVVTILFIFLFVCVFFYNDIGFESSSDLGFEGLTLILLTYIFLTTVNAFKKYPFLHAGACLLLFNKAYDL
LTEFPQIEFYADHFEVIDTLLDDGSLFIAFLLIAVGITQMMQMLAKQTMKDELTNLYNRRKLSEIKLTEFDLIYFDLNDL
KKVNDLKGHQVGDLMIIRFSQALRNACLKQEMAFRVGGDEFIVTTHKGRSSAFIKHIHEQLCNEQISFAYGIKTSTKDDL
ENALICSDKRMYNMKEEQKKEHPKKCSDSI
>Mature_270_residues
MIMTNKKMPFIVVTILFIFLFVCVFFYNDIGFESSSDLGFEGLTLILLTYIFLTTVNAFKKYPFLHAGACLLLFNKAYDL
LTEFPQIEFYADHFEVIDTLLDDGSLFIAFLLIAVGITQMMQMLAKQTMKDELTNLYNRRKLSEIKLTEFDLIYFDLNDL
KKVNDLKGHQVGDLMIIRFSQALRNACLKQEMAFRVGGDEFIVTTHKGRSSAFIKHIHEQLCNEQISFAYGIKTSTKDDL
ENALICSDKRMYNMKEEQKKEHPKKCSDSI

Specific function: Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081974, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: =2.7.7.65 [H]

Molecular weight: Translated: 31229; Mature: 31229

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMTNKKMPFIVVTILFIFLFVCVFFYNDIGFESSSDLGFEGLTLILLTYIFLTTVNAFK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KYPFLHAGACLLLFNKAYDLLTEFPQIEFYADHFEVIDTLLDDGSLFIAFLLIAVGITQM
HCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MQMLAKQTMKDELTNLYNRRKLSEIKLTEFDLIYFDLNDLKKVNDLKGHQVGDLMIIRFS
HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHH
QALRNACLKQEMAFRVGGDEFIVTTHKGRSSAFIKHIHEQLCNEQISFAYGIKTSTKDDL
HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ENALICSDKRMYNMKEEQKKEHPKKCSDSI
HHHHHCCCHHHHCCHHHHHHHCHHHCCCCC
>Mature Secondary Structure
MIMTNKKMPFIVVTILFIFLFVCVFFYNDIGFESSSDLGFEGLTLILLTYIFLTTVNAFK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KYPFLHAGACLLLFNKAYDLLTEFPQIEFYADHFEVIDTLLDDGSLFIAFLLIAVGITQM
HCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MQMLAKQTMKDELTNLYNRRKLSEIKLTEFDLIYFDLNDLKKVNDLKGHQVGDLMIIRFS
HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHH
QALRNACLKQEMAFRVGGDEFIVTTHKGRSSAFIKHIHEQLCNEQISFAYGIKTSTKDDL
HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ENALICSDKRMYNMKEEQKKEHPKKCSDSI
HHHHHCCCHHHHCCHHHHHHHCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]