Click here to switch to the map view.

The map label for this gene is ybfB [H]

Identifier: 59713250

GI number: 59713250

Start: 71015

End: 72223

Strand: Reverse

Name: ybfB [H]

Synonym: VF_A0067

Alternate gene names: 59713250

Gene position: 72223-71015 (Counterclockwise)

Preceding gene: 59713251

Following gene: 59713249

Centisome position: 5.43

GC content: 40.86

Gene sequence:

>1209_bases
ATGAGTATTTTTCGTTTTCCACCACTAGTATGGCTTGGGATCGGGATTTTAATTATCAGTCTAGGGATCAGACAATCGTT
CGGCATTTTTATGATGCCAATATCAGAGCACTTCCAAACAGGTCGTGAATTTTTCAGTTTTGCTATTGCACTACAAAACC
TTTTATTTGGTATTTTCCAACCATTTATAGGCATGGCATCTGACAAATGGGGCTCTAAACGCATTATCATTATTGGTGCT
ATCGCTTATGCATTAGGTCTTGCTCTCACGTCTATAACAACTGAATCAAGTATGCTTTATGTCTCTCTTGGTGCATTAGT
TGGCCTTGGATTAAGTGCAACAAGCTATGTGATCATTTTAGGAGCGGTAGCAAAAGTGGTTCCTGCTGAGCACGCAGCTA
AAGCATTTGGCTTAACGACAGCCGCTGGTTCATTTGGTATGTTTGCCATGATCCCTGGCGCACAAACGCTGCTACACGAT
TTTAACTGGCAAATTGCAATGCAAGTGTTTGCAATGTTATGTACGCTTATGGTGGCTTTTGCGTTATTTATGAAAACCGC
AAAACCAAGCTCACAAACAGCAGCAATAGAAGATACTCAAACCCTTACTGAAGCTCTAAAAGAAGCATTTTCACATAAAG
GATACTGGTTAATTCATGCTGGTTTCTTTGTATGTGGCTTCCATGTCATGTTTATTGCGACGCATTTACCAAGTTATTTA
GCCGATAAACACTTGCCAGCATCAAGTGCAGCAATGGCACTGGCTTATGTCGGCATCTTCAATATCTTTGGATCTTACTT
CTGGGGTGTAATGGGAGACAAATTCAACAAACGTCATGTTATGTCCGCATTATATTTTGTACGTACTATTGTGATTGGTG
CATTCGTCACTTTACCTGTAACAGAACATACAGCAGCTATCTTCGGCGGTGCGATTGGTTTCTGTTGGTTAGGCACTGTG
CCATTGACCTCTGGTTTAGTACGACAAATCTTCGGTGCTCGTTACTTATCAACCTTGTATGGCTTAGTGTTCTTTACTCA
CCAAATAGGCAGTTTTTTAGGTGCTTGGGCTGGTGGTCGTATTTACGATTACTACGGTTCATATGAACCAATCTGGTGGT
CTACAGTGGTGCTTGCTTTCTGTGCAGCATTAATTCATTTACCAATAAATGATAAACCAGTAGAAAGACTGAGATTGCAA
AGCGTGTAA

Upstream 100 bases:

>100_bases
AAATTTATTAGCTCAGCAAGCAGTTAATAGCGGTTGTCATCAGCAAACAGGGCAAGATCATAACCACCATCATTCTCACC
ACCATCACTAAGAGCACATT

Downstream 100 bases:

>100_bases
ATACGTCTCAAGGCAATACGAATAAGAAAGCCAATACTCGTCATGTGTATCGGCTTTTTACTGTCTATTAGCAGTTCAGT
TTTATCAGTTAATACAAGCT

Product: oxalate/formate antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSIFRFPPLVWLGIGILIISLGIRQSFGIFMMPISEHFQTGREFFSFAIALQNLLFGIFQPFIGMASDKWGSKRIIIIGA
IAYALGLALTSITTESSMLYVSLGALVGLGLSATSYVIILGAVAKVVPAEHAAKAFGLTTAAGSFGMFAMIPGAQTLLHD
FNWQIAMQVFAMLCTLMVAFALFMKTAKPSSQTAAIEDTQTLTEALKEAFSHKGYWLIHAGFFVCGFHVMFIATHLPSYL
ADKHLPASSAAMALAYVGIFNIFGSYFWGVMGDKFNKRHVMSALYFVRTIVIGAFVTLPVTEHTAAIFGGAIGFCWLGTV
PLTSGLVRQIFGARYLSTLYGLVFFTHQIGSFLGAWAGGRIYDYYGSYEPIWWSTVVLAFCAALIHLPINDKPVERLRLQ
SV

Sequences:

>Translated_402_residues
MSIFRFPPLVWLGIGILIISLGIRQSFGIFMMPISEHFQTGREFFSFAIALQNLLFGIFQPFIGMASDKWGSKRIIIIGA
IAYALGLALTSITTESSMLYVSLGALVGLGLSATSYVIILGAVAKVVPAEHAAKAFGLTTAAGSFGMFAMIPGAQTLLHD
FNWQIAMQVFAMLCTLMVAFALFMKTAKPSSQTAAIEDTQTLTEALKEAFSHKGYWLIHAGFFVCGFHVMFIATHLPSYL
ADKHLPASSAAMALAYVGIFNIFGSYFWGVMGDKFNKRHVMSALYFVRTIVIGAFVTLPVTEHTAAIFGGAIGFCWLGTV
PLTSGLVRQIFGARYLSTLYGLVFFTHQIGSFLGAWAGGRIYDYYGSYEPIWWSTVVLAFCAALIHLPINDKPVERLRLQ
SV
>Mature_401_residues
SIFRFPPLVWLGIGILIISLGIRQSFGIFMMPISEHFQTGREFFSFAIALQNLLFGIFQPFIGMASDKWGSKRIIIIGAI
AYALGLALTSITTESSMLYVSLGALVGLGLSATSYVIILGAVAKVVPAEHAAKAFGLTTAAGSFGMFAMIPGAQTLLHDF
NWQIAMQVFAMLCTLMVAFALFMKTAKPSSQTAAIEDTQTLTEALKEAFSHKGYWLIHAGFFVCGFHVMFIATHLPSYLA
DKHLPASSAAMALAYVGIFNIFGSYFWGVMGDKFNKRHVMSALYFVRTIVIGAFVTLPVTEHTAAIFGGAIGFCWLGTVP
LTSGLVRQIFGARYLSTLYGLVFFTHQIGSFLGAWAGGRIYDYYGSYEPIWWSTVVLAFCAALIHLPINDKPVERLRLQS
V

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Homo sapiens, GI291621700, Length=384, Percent_Identity=21.6145833333333, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1789969, Length=362, Percent_Identity=26.2430939226519, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43915; Mature: 43784

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFRFPPLVWLGIGILIISLGIRQSFGIFMMPISEHFQTGREFFSFAIALQNLLFGIFQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFIGMASDKWGSKRIIIIGAIAYALGLALTSITTESSMLYVSLGALVGLGLSATSYVIIL
HHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
GAVAKVVPAEHAAKAFGLTTAAGSFGMFAMIPGAQTLLHDFNWQIAMQVFAMLCTLMVAF
HHHHHHHCHHHHHHHHCCHHCCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALFMKTAKPSSQTAAIEDTQTLTEALKEAFSHKGYWLIHAGFFVCGFHVMFIATHLPSYL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
ADKHLPASSAAMALAYVGIFNIFGSYFWGVMGDKFNKRHVMSALYFVRTIVIGAFVTLPV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TEHTAAIFGGAIGFCWLGTVPLTSGLVRQIFGARYLSTLYGLVFFTHQIGSFLGAWAGGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IYDYYGSYEPIWWSTVVLAFCAALIHLPINDKPVERLRLQSV
EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
SIFRFPPLVWLGIGILIISLGIRQSFGIFMMPISEHFQTGREFFSFAIALQNLLFGIFQ
CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFIGMASDKWGSKRIIIIGAIAYALGLALTSITTESSMLYVSLGALVGLGLSATSYVIIL
HHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
GAVAKVVPAEHAAKAFGLTTAAGSFGMFAMIPGAQTLLHDFNWQIAMQVFAMLCTLMVAF
HHHHHHHCHHHHHHHHCCHHCCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALFMKTAKPSSQTAAIEDTQTLTEALKEAFSHKGYWLIHAGFFVCGFHVMFIATHLPSYL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
ADKHLPASSAAMALAYVGIFNIFGSYFWGVMGDKFNKRHVMSALYFVRTIVIGAFVTLPV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TEHTAAIFGGAIGFCWLGTVPLTSGLVRQIFGARYLSTLYGLVFFTHQIGSFLGAWAGGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IYDYYGSYEPIWWSTVVLAFCAALIHLPINDKPVERLRLQSV
EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]