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The map label for this gene is yciR [C]

Identifier: 59713240

GI number: 59713240

Start: 60359

End: 62350

Strand: Reverse

Name: yciR [C]

Synonym: VF_A0057

Alternate gene names: 59713240

Gene position: 62350-60359 (Counterclockwise)

Preceding gene: 59713241

Following gene: 59713238

Centisome position: 4.69

GC content: 35.69

Gene sequence:

>1992_bases
ATGATACTTCAATGGTTCAGTGCATTACCGTTACGTAAAAAAGTCATCTACCCTATTTGGACATTACTGACCCTTAGTAC
AATGATTCTAGGGGCAAGTGTTGCTCATTTTATGGGAGTAACTCATAGTGCTAATTTATACACTCGTACGTCTATTCTCG
CTCAAGGTATTGCTAGCAATCTATCTGGTGCGTTGATCTTTAATGACCAACAAACAGGTTTAGATCAAATGAATGCACTG
TCCTTTGATCCTGAAGTGATCGCTGCTCGAGTTGAGCATATTAATAGCGAACCTTTCGCCAAATTAGATAACTTGCCTGA
AAACTGTTCATGGCACGAACGAAATATCCAATGTTCACACTCAGTCTTTTTTGCAATTACACACCCAATAACATTAGATA
ATGAACACCTTGGTAATCTGACAGTATGGGCCTCAAAAGACAGCATGTTTGAACAACGCAATCAGATTTTAACCATTTTC
TTAATTACTACGGTTATCTTCTCACTTTTAGCGTTATTCTTTGCACACAGAGTACACCGATTAATTGCCACACCTTTATT
GTCCATGTTTAATTCAATGCAAACAGTTATCAAAAAAGGGGTAACAGAACAAAGGCTGCATATTGTTCATCCTGACGAAA
TTGGAAAGCTCACTCATTGCTTTAATGAAATGCTTGATAACTTAAGTCAACGTGACTCTCAATTAACACTGGCATTTCAA
AGACTTGAAGATAAAACTCATTACATTAATCAAGTGCTAGATTCACTTGATCAAGGGCTATTAGTTGTCTCACCTAATAA
AAAAGTAATTTATCATAATCCAGCAGCTCGTTTATTGTTGCCTCAAATTCAGCTCAATAATGATGAAATGACCTCTCTTA
ATCAGCAACATATTGAAAATTTGTTGTCTGATTTTGAACCAATCAACCGATTAACTCTACTTCGTGAATGCATCGAAACC
CATCAACGATTAGAACCAACAACCCTTCGCCACCAAGGTACAGGACAGCAATATCAAATATCGACTTACCCGATTGCTGG
TGAAAATAATTCATTAGTACATATAGAAGATATCAGTCAACGTTATCTCATTGAGCAACGTCAACGAATGGCTGAAATGA
TTTTTGACCAAAATCCAAGTTCAGTGATTGTTGTAACAAGAAAAATGGTAATAGAGACTAAAAATAATGCCTTTATTCAA
ACATTTGGAAACATCACCAATCTAGATCAGCTGCATTTACGTCAGCCTATCGAGCTCAATACATCGGTATTAAAACAAGT
GCTAAAAGTAGGTTATTTAAAACTTCAAACAGACGTTACAAGTCAGTTTTTTTCAAGAAAGCACGGTAACAAATCACATT
GGTTACCTTGTTTATTAACCATTAAATTAATCAAAAATGGCGATAATAAAGTAGAGTCATTTGTAATATCACTTAATGAC
CAAACTCAAGTAAAAGAGCTTCAACGCCTTAACTTTGAAGCCAACCATGATGGGTTAACACAATTAGCTAACCGTCAAAA
TGCTTATAAACAACTACTTAATGCACATAAAAAACAGAAATCCGTTTATCTAATCTTCCTCGATTTAGATGGTTTTAAAG
CGGTAAATGATACTTATGGGCATCAATGTGGTGACGATTTATTGAAAATCATTTCACAACGTTTGACCAATAATGTTTTT
GAAAACGATCTTGTCGCTCGTCTATCTGGCGATGAGTTTTTACTTGGTTTGTACTTAACAAATCCGAGGGTAGCGACTCA
AGAAATTAATGCTATTTTGCAGCGTATCTTAAATGCAATTAGCTACCCTATTCATATTAATGGAGCCATTCCTTATGTAT
CAGCAAGTATTGGAGCATACTACTGGTCTGGTAACGATCAGACGCCATTAGAAGAGGCTTTAGAAAAAGCTGATAAGGCC
ATGTACCATGCTAAACTTTCAGGAAAAAATCGTTACCATATAGCAAAAGAAATCAATCCGTTTCTCGTTTAA

Upstream 100 bases:

>100_bases
TTAAACCTTTGATCAGTTTACATAATATTAAGCCAACAGAGCTTTCTCTTCGTTCACAATTATTATCTGTATCTGAAATA
GCAACCAATGAGGGGTCATT

Downstream 100 bases:

>100_bases
GCATAATAGGGGCAAACTCTTTATATGAGTTGCCTTTATCTTTTTTGGCCTCATACATGGCGATGTCAGCAAACTTTATA
AGCTCTTCGCCATCAATGCT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MILQWFSALPLRKKVIYPIWTLLTLSTMILGASVAHFMGVTHSANLYTRTSILAQGIASNLSGALIFNDQQTGLDQMNAL
SFDPEVIAARVEHINSEPFAKLDNLPENCSWHERNIQCSHSVFFAITHPITLDNEHLGNLTVWASKDSMFEQRNQILTIF
LITTVIFSLLALFFAHRVHRLIATPLLSMFNSMQTVIKKGVTEQRLHIVHPDEIGKLTHCFNEMLDNLSQRDSQLTLAFQ
RLEDKTHYINQVLDSLDQGLLVVSPNKKVIYHNPAARLLLPQIQLNNDEMTSLNQQHIENLLSDFEPINRLTLLRECIET
HQRLEPTTLRHQGTGQQYQISTYPIAGENNSLVHIEDISQRYLIEQRQRMAEMIFDQNPSSVIVVTRKMVIETKNNAFIQ
TFGNITNLDQLHLRQPIELNTSVLKQVLKVGYLKLQTDVTSQFFSRKHGNKSHWLPCLLTIKLIKNGDNKVESFVISLND
QTQVKELQRLNFEANHDGLTQLANRQNAYKQLLNAHKKQKSVYLIFLDLDGFKAVNDTYGHQCGDDLLKIISQRLTNNVF
ENDLVARLSGDEFLLGLYLTNPRVATQEINAILQRILNAISYPIHINGAIPYVSASIGAYYWSGNDQTPLEEALEKADKA
MYHAKLSGKNRYHIAKEINPFLV

Sequences:

>Translated_663_residues
MILQWFSALPLRKKVIYPIWTLLTLSTMILGASVAHFMGVTHSANLYTRTSILAQGIASNLSGALIFNDQQTGLDQMNAL
SFDPEVIAARVEHINSEPFAKLDNLPENCSWHERNIQCSHSVFFAITHPITLDNEHLGNLTVWASKDSMFEQRNQILTIF
LITTVIFSLLALFFAHRVHRLIATPLLSMFNSMQTVIKKGVTEQRLHIVHPDEIGKLTHCFNEMLDNLSQRDSQLTLAFQ
RLEDKTHYINQVLDSLDQGLLVVSPNKKVIYHNPAARLLLPQIQLNNDEMTSLNQQHIENLLSDFEPINRLTLLRECIET
HQRLEPTTLRHQGTGQQYQISTYPIAGENNSLVHIEDISQRYLIEQRQRMAEMIFDQNPSSVIVVTRKMVIETKNNAFIQ
TFGNITNLDQLHLRQPIELNTSVLKQVLKVGYLKLQTDVTSQFFSRKHGNKSHWLPCLLTIKLIKNGDNKVESFVISLND
QTQVKELQRLNFEANHDGLTQLANRQNAYKQLLNAHKKQKSVYLIFLDLDGFKAVNDTYGHQCGDDLLKIISQRLTNNVF
ENDLVARLSGDEFLLGLYLTNPRVATQEINAILQRILNAISYPIHINGAIPYVSASIGAYYWSGNDQTPLEEALEKADKA
MYHAKLSGKNRYHIAKEINPFLV
>Mature_663_residues
MILQWFSALPLRKKVIYPIWTLLTLSTMILGASVAHFMGVTHSANLYTRTSILAQGIASNLSGALIFNDQQTGLDQMNAL
SFDPEVIAARVEHINSEPFAKLDNLPENCSWHERNIQCSHSVFFAITHPITLDNEHLGNLTVWASKDSMFEQRNQILTIF
LITTVIFSLLALFFAHRVHRLIATPLLSMFNSMQTVIKKGVTEQRLHIVHPDEIGKLTHCFNEMLDNLSQRDSQLTLAFQ
RLEDKTHYINQVLDSLDQGLLVVSPNKKVIYHNPAARLLLPQIQLNNDEMTSLNQQHIENLLSDFEPINRLTLLRECIET
HQRLEPTTLRHQGTGQQYQISTYPIAGENNSLVHIEDISQRYLIEQRQRMAEMIFDQNPSSVIVVTRKMVIETKNNAFIQ
TFGNITNLDQLHLRQPIELNTSVLKQVLKVGYLKLQTDVTSQFFSRKHGNKSHWLPCLLTIKLIKNGDNKVESFVISLND
QTQVKELQRLNFEANHDGLTQLANRQNAYKQLLNAHKKQKSVYLIFLDLDGFKAVNDTYGHQCGDDLLKIISQRLTNNVF
ENDLVARLSGDEFLLGLYLTNPRVATQEINAILQRILNAISYPIHINGAIPYVSASIGAYYWSGNDQTPLEEALEKADKA
MYHAKLSGKNRYHIAKEINPFLV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=215, Percent_Identity=33.953488372093, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1788381, Length=186, Percent_Identity=35.4838709677419, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081881, Length=421, Percent_Identity=25.1781472684086, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=29.3103448275862, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=33.9181286549708, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=32.5581395348837, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=37.3493975903614, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=193, Percent_Identity=32.6424870466321, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=32.1637426900585, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081977, Length=155, Percent_Identity=33.5483870967742, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75629; Mature: 75629

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILQWFSALPLRKKVIYPIWTLLTLSTMILGASVAHFMGVTHSANLYTRTSILAQGIASN
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
LSGALIFNDQQTGLDQMNALSFDPEVIAARVEHINSEPFAKLDNLPENCSWHERNIQCSH
CCCEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCEECC
SVFFAITHPITLDNEHLGNLTVWASKDSMFEQRNQILTIFLITTVIFSLLALFFAHRVHR
EEEEEEECCEEECCCCCCCEEEEECCHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHH
LIATPLLSMFNSMQTVIKKGVTEQRLHIVHPDEIGKLTHCFNEMLDNLSQRDSQLTLAFQ
HHHHHHHHHHHHHHHHHHCCCCHHCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RLEDKTHYINQVLDSLDQGLLVVSPNKKVIYHNPAARLLLPQIQLNNDEMTSLNQQHIEN
HHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCHHEEECEEEECCCHHHHCCHHHHHH
LLSDFEPINRLTLLRECIETHQRLEPTTLRHQGTGQQYQISTYPIAGENNSLVHIEDISQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEEEECCCCCCEEEEHHHHH
RYLIEQRQRMAEMIFDQNPSSVIVVTRKMVIETKNNAFIQTFGNITNLDQLHLRQPIELN
HHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCEEEEECCCCCCCHHHHCCCCCCCC
TSVLKQVLKVGYLKLQTDVTSQFFSRKHGNKSHWLPCLLTIKLIKNGDNKVESFVISLND
HHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCC
QTQVKELQRLNFEANHDGLTQLANRQNAYKQLLNAHKKQKSVYLIFLDLDGFKAVNDTYG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHCHHCC
HQCGDDLLKIISQRLTNNVFENDLVARLSGDEFLLGLYLTNPRVATQEINAILQRILNAI
CCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
SYPIHINGAIPYVSASIGAYYWSGNDQTPLEEALEKADKAMYHAKLSGKNRYHIAKEINP
CCCEEECCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHCCCC
FLV
CCC
>Mature Secondary Structure
MILQWFSALPLRKKVIYPIWTLLTLSTMILGASVAHFMGVTHSANLYTRTSILAQGIASN
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
LSGALIFNDQQTGLDQMNALSFDPEVIAARVEHINSEPFAKLDNLPENCSWHERNIQCSH
CCCEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCEECC
SVFFAITHPITLDNEHLGNLTVWASKDSMFEQRNQILTIFLITTVIFSLLALFFAHRVHR
EEEEEEECCEEECCCCCCCEEEEECCHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHH
LIATPLLSMFNSMQTVIKKGVTEQRLHIVHPDEIGKLTHCFNEMLDNLSQRDSQLTLAFQ
HHHHHHHHHHHHHHHHHHCCCCHHCEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RLEDKTHYINQVLDSLDQGLLVVSPNKKVIYHNPAARLLLPQIQLNNDEMTSLNQQHIEN
HHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCHHEEECEEEECCCHHHHCCHHHHHH
LLSDFEPINRLTLLRECIETHQRLEPTTLRHQGTGQQYQISTYPIAGENNSLVHIEDISQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEEEECCCCCCEEEEHHHHH
RYLIEQRQRMAEMIFDQNPSSVIVVTRKMVIETKNNAFIQTFGNITNLDQLHLRQPIELN
HHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCEEEEECCCCCCCHHHHCCCCCCCC
TSVLKQVLKVGYLKLQTDVTSQFFSRKHGNKSHWLPCLLTIKLIKNGDNKVESFVISLND
HHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCC
QTQVKELQRLNFEANHDGLTQLANRQNAYKQLLNAHKKQKSVYLIFLDLDGFKAVNDTYG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHCHHCC
HQCGDDLLKIISQRLTNNVFENDLVARLSGDEFLLGLYLTNPRVATQEINAILQRILNAI
CCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
SYPIHINGAIPYVSASIGAYYWSGNDQTPLEEALEKADKAMYHAKLSGKNRYHIAKEINP
CCCEEECCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHCCCC
FLV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]