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The map label for this gene is 59713231

Identifier: 59713231

GI number: 59713231

Start: 53662

End: 54114

Strand: Reverse

Name: 59713231

Synonym: VF_A0048

Alternate gene names: NA

Gene position: 54114-53662 (Counterclockwise)

Preceding gene: 59713232

Following gene: 59713226

Centisome position: 4.07

GC content: 37.09

Gene sequence:

>453_bases
ATGATGAAAAAACTCACTCAAACTGAACTTGATTATATTCTTCAACAACACTCTCTTTGGTTACAACATCAAGGAGGCGA
ACGTGCTGTTTTAAATAATACCGATTTAAGTCATCTTAACCTTGAAGGCGCGGTTCTTCATCGCGCAAATTTGACTCGAA
CTAACTTCACTAACGCTAACTTATGCGACGCTGATATGAGTGATGCTGACATTACTTATGCGATATTTAAAGAAGCCGAC
CTCAACAATGCAAGCTTTAGAGACGCCGATTTACGTAATGCAGATTTCAGTTATGCACAAATGCCAAATGTCGATTTATA
TCGCGCTGATGTTTATCGTGCTGACTTTAATAATGCAAATCTAAATGATGATGCATTTAATAAACCAACAATAGGCAACA
CCATCATAACATTACGAGGTTCTGGTAAATCTGAGTGTCTTGCTTTTCATTAA

Upstream 100 bases:

>100_bases
CTAGACGTTGTGTATTACGATTGTCACTTCGAGTAAATGGTGAATGCATATTAGGAGCGGATACAGAAACATGGCAGAAA
AAATTAAATGAGTAGACACA

Downstream 100 bases:

>100_bases
AAGAGGGAGGGTTAAGTGCGGACTTTAAACAAAAAACCAATCACTGTGAATAATACAACACAGTGATTGGTCAGATAGGT
TATCTGAAATAGCAGTAATT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MMKKLTQTELDYILQQHSLWLQHQGGERAVLNNTDLSHLNLEGAVLHRANLTRTNFTNANLCDADMSDADITYAIFKEAD
LNNASFRDADLRNADFSYAQMPNVDLYRADVYRADFNNANLNDDAFNKPTIGNTIITLRGSGKSECLAFH

Sequences:

>Translated_150_residues
MMKKLTQTELDYILQQHSLWLQHQGGERAVLNNTDLSHLNLEGAVLHRANLTRTNFTNANLCDADMSDADITYAIFKEAD
LNNASFRDADLRNADFSYAQMPNVDLYRADVYRADFNNANLNDDAFNKPTIGNTIITLRGSGKSECLAFH
>Mature_150_residues
MMKKLTQTELDYILQQHSLWLQHQGGERAVLNNTDLSHLNLEGAVLHRANLTRTNFTNANLCDADMSDADITYAIFKEAD
LNNASFRDADLRNADFSYAQMPNVDLYRADVYRADFNNANLNDDAFNKPTIGNTIITLRGSGKSECLAFH

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 16916; Mature: 16916

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKLTQTELDYILQQHSLWLQHQGGERAVLNNTDLSHLNLEGAVLHRANLTRTNFTNAN
CCCCHHHHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEECCCEEEECCCCCCCCCCCCC
LCDADMSDADITYAIFKEADLNNASFRDADLRNADFSYAQMPNVDLYRADVYRADFNNAN
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEEEEEECCCCCC
LNDDAFNKPTIGNTIITLRGSGKSECLAFH
CCCCCCCCCCCCCEEEEEECCCCCCEEECC
>Mature Secondary Structure
MMKKLTQTELDYILQQHSLWLQHQGGERAVLNNTDLSHLNLEGAVLHRANLTRTNFTNAN
CCCCHHHHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEECCCEEEECCCCCCCCCCCCC
LCDADMSDADITYAIFKEADLNNASFRDADLRNADFSYAQMPNVDLYRADVYRADFNNAN
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEEEEEECCCCCC
LNDDAFNKPTIGNTIITLRGSGKSECLAFH
CCCCCCCCCCCCCEEEEEECCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA