Click here to switch to the map view.

The map label for this gene is pepT3 [H]

Identifier: 59713187

GI number: 59713187

Start: 5944

End: 7050

Strand: Reverse

Name: pepT3 [H]

Synonym: VF_A0004

Alternate gene names: 59713187

Gene position: 7050-5944 (Counterclockwise)

Preceding gene: 59713190

Following gene: NA

Centisome position: 0.53

GC content: 39.93

Gene sequence:

>1107_bases
ATGACTCAAGTGAATCAAGAACGTTTAGTAAATCACTTTCTAGATATTATCCAGATTGATAGTGAATCAAAAAATGAAAA
AGCCATTGCAGAAGCGTTAGCAGAGCAATTAGGCGAGCTTGGCTTTACCGTATCAAAATTACCAGTACCAGAGCATGTAT
CAAATGGTTTCAACATCTATGCTCGATTGGATGGCTCATTAGAGGGAAGCATTATATTTAGCTCTCACATGGATACAGTA
ACGCCAGGTAACGGCATTGAACCAATTATTGAAGATGGGGTTATCCGCTCTAAAGGTAACACTATTCTTGGTGGCGATGA
CAAATCAGGTATCGCTGCGGTAATGGAAGCGGTTCGAGTTATTAAAGAAAACAACCAAGAACACAAAACACTAGAGCTAG
CTTTTACCGTTTATGAAGAAGGCGGTTTACACGGTTCTAAAAATTTCGATATGAGCTACATTCAATCTAACCACGCAATC
GTGCTAGATTCAGGTGGCCCTATTGGTACTATCATTACATCTGCGCCTGGCCAGCAAAACCTTAAAGTAACTATTACAGG
TCGTCCAGCCCACGCAGGTTTAGCTCCAGAAGAAGGCATCAATGCCCTAACGGTTGCTGCTGATGCGATTACTAATATGA
CATTATCACGCATTGATGAAGAAACAACGGCTAACATCGGTGTCGTACGTGGTGGTCAAGCAACGAACATTGTAATGCCA
GAACTGTACATTGAAGGTGAAGCTCGTTCTCTAGATGATGAAAAATTAGCGAAGCAAGTTGAGCATATGGAATCAACATT
TAAAGCAGCAGCTGATAAACACGGTGCTGAAATTGAAATCATCTCTACTCGCGCATACAACGCTTATAAAATTGCAGATG
AAAACCCACATGTTGTAAGTATTAAAGAAGCGTTTGAAAGCATTAACATCGATCCGTTTACTAAACCAACTGGTGGTGGC
TCAGATGCAAACGTATTTAATGAAAAAGGCTTAACAACGGTTAACCTTTCTACTGGTATGTCAAAAGTACATACAACAGA
AGAATTCATTAAAGTATCAGATATGGTTGATATTACTCGTTTCGTTGCAGCGTATCTAACTCGTTAA

Upstream 100 bases:

>100_bases
ATGGTAAAGCTGTCGGCGCTTTTATTGATTCAGTTCATCTTTCTGGGCGCTTTCTTTGGTTAGAGTGATTTTAAGTTTCC
TTTAAGAAAGAAGAAAAATC

Downstream 100 bases:

>100_bases
TCTTAACGTTTATCATAAATATAATAAAACAGCCACTCGATGATAGTGGCTGTTTTTTTGGATAAAAGTTCAACTTTATG
CTGTTTTTTTAATCCAGTTA

Product: peptidase T-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTQVNQERLVNHFLDIIQIDSESKNEKAIAEALAEQLGELGFTVSKLPVPEHVSNGFNIYARLDGSLEGSIIFSSHMDTV
TPGNGIEPIIEDGVIRSKGNTILGGDDKSGIAAVMEAVRVIKENNQEHKTLELAFTVYEEGGLHGSKNFDMSYIQSNHAI
VLDSGGPIGTIITSAPGQQNLKVTITGRPAHAGLAPEEGINALTVAADAITNMTLSRIDEETTANIGVVRGGQATNIVMP
ELYIEGEARSLDDEKLAKQVEHMESTFKAAADKHGAEIEIISTRAYNAYKIADENPHVVSIKEAFESINIDPFTKPTGGG
SDANVFNEKGLTTVNLSTGMSKVHTTEEFIKVSDMVDITRFVAAYLTR

Sequences:

>Translated_368_residues
MTQVNQERLVNHFLDIIQIDSESKNEKAIAEALAEQLGELGFTVSKLPVPEHVSNGFNIYARLDGSLEGSIIFSSHMDTV
TPGNGIEPIIEDGVIRSKGNTILGGDDKSGIAAVMEAVRVIKENNQEHKTLELAFTVYEEGGLHGSKNFDMSYIQSNHAI
VLDSGGPIGTIITSAPGQQNLKVTITGRPAHAGLAPEEGINALTVAADAITNMTLSRIDEETTANIGVVRGGQATNIVMP
ELYIEGEARSLDDEKLAKQVEHMESTFKAAADKHGAEIEIISTRAYNAYKIADENPHVVSIKEAFESINIDPFTKPTGGG
SDANVFNEKGLTTVNLSTGMSKVHTTEEFIKVSDMVDITRFVAAYLTR
>Mature_367_residues
TQVNQERLVNHFLDIIQIDSESKNEKAIAEALAEQLGELGFTVSKLPVPEHVSNGFNIYARLDGSLEGSIIFSSHMDTVT
PGNGIEPIIEDGVIRSKGNTILGGDDKSGIAAVMEAVRVIKENNQEHKTLELAFTVYEEGGLHGSKNFDMSYIQSNHAIV
LDSGGPIGTIITSAPGQQNLKVTITGRPAHAGLAPEEGINALTVAADAITNMTLSRIDEETTANIGVVRGGQATNIVMPE
LYIEGEARSLDDEKLAKQVEHMESTFKAAADKHGAEIEIISTRAYNAYKIADENPHVVSIKEAFESINIDPFTKPTGGGS
DANVFNEKGLTTVNLSTGMSKVHTTEEFIKVSDMVDITRFVAAYLTR

Specific function: Could be a peptidase [H]

COG id: COG2195

COG function: function code E; Di- and tripeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1787372, Length=400, Percent_Identity=26.75, Blast_Score=99, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17551016, Length=241, Percent_Identity=29.4605809128631, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR010162
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.4.11.4

Molecular weight: Translated: 39623; Mature: 39492

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVNQERLVNHFLDIIQIDSESKNEKAIAEALAEQLGELGFTVSKLPVPEHVSNGFNIY
CCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCEEECCCCHHHHCCCEEEE
ARLDGSLEGSIIFSSHMDTVTPGNGIEPIIEDGVIRSKGNTILGGDDKSGIAAVMEAVRV
EEECCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEECCCCEEECCCCCCHHHHHHHHHHH
IKENNQEHKTLELAFTVYEEGGLHGSKNFDMSYIQSNHAIVLDSGGPIGTIITSAPGQQN
HHCCCCCCEEEEEEEEEEECCCCCCCCCCCHHEEECCCEEEEECCCCEEEEEECCCCCCC
LKVTITGRPAHAGLAPEEGINALTVAADAITNMTLSRIDEETTANIGVVRGGQATNIVMP
EEEEEECCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHCCCHHCCCEEEEECCCCCEEECC
ELYIEGEARSLDDEKLAKQVEHMESTFKAAADKHGAEIEIISTRAYNAYKIADENPHVVS
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCEEE
IKEAFESINIDPFTKPTGGGSDANVFNEKGLTTVNLSTGMSKVHTTEEFIKVSDMVDITR
HHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
FVAAYLTR
HHHHHHCC
>Mature Secondary Structure 
TQVNQERLVNHFLDIIQIDSESKNEKAIAEALAEQLGELGFTVSKLPVPEHVSNGFNIY
CCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCEEECCCCHHHHCCCEEEE
ARLDGSLEGSIIFSSHMDTVTPGNGIEPIIEDGVIRSKGNTILGGDDKSGIAAVMEAVRV
EEECCCCCCEEEEECCCCCCCCCCCCCHHHHCCEEECCCCEEECCCCCCHHHHHHHHHHH
IKENNQEHKTLELAFTVYEEGGLHGSKNFDMSYIQSNHAIVLDSGGPIGTIITSAPGQQN
HHCCCCCCEEEEEEEEEEECCCCCCCCCCCHHEEECCCEEEEECCCCEEEEEECCCCCCC
LKVTITGRPAHAGLAPEEGINALTVAADAITNMTLSRIDEETTANIGVVRGGQATNIVMP
EEEEEECCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHCCCHHCCCEEEEECCCCCEEECC
ELYIEGEARSLDDEKLAKQVEHMESTFKAAADKHGAEIEIISTRAYNAYKIADENPHVVS
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCEEE
IKEAFESINIDPFTKPTGGGSDANVFNEKGLTTVNLSTGMSKVHTTEEFIKVSDMVDITR
HHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
FVAAYLTR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Aminopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]