| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is maeB [H]
Identifier: 59712879
GI number: 59712879
Start: 2553512
End: 2554759
Strand: Reverse
Name: maeB [H]
Synonym: VF_2272
Alternate gene names: 59712879
Gene position: 2554759-2553512 (Counterclockwise)
Preceding gene: 59712880
Following gene: 59712874
Centisome position: 88.17
GC content: 41.11
Gene sequence:
>1248_bases ATGTCTGAAGAATTTCGCAAGCAAGCTCTAGATTATCACGCTTACCCAACTCCAGGTAAAATTGAAGTTGCATTGACTAA ACCTGCTGACACAGTAGAAGACCTTGCTTTGGCTTACAGCCCTGGTGTGGCTGAGCCTGTACGTGAAATTGCAAAGAACC CTGATGATGTTTATAAATACACATCAAAAGGCAATATGGTTGCGGTTATTTCAAATGGTACGGCAATTCTTGGTTTAGGT AACTTAGGTCCTCTTGCATCAAAACCAGTAATGGAAGGTAAGTCGCTTCTTTTTAAACGTTTTGCAGGCTTAGACTCTAT TGATATCGAAGTAAAACACCGCACGATTGATGAGTTTGTTGATACAGTTGCTAATATTGCAGATACATTTGGTGGTATTA ACTTAGAAGATATTAAAGCACCTGATTGTTTTGAGATTGAACGTCGCCTTATTGAAATTTGTGATGTGCCAGTATTCCAT GATGATCAACATGGTACTGCAATCGTAACTGCTGCTGGTATGTTAAATGCGATTGAGCTGCAAGGTAAGAAGTTAGAAGA TGCGATCATTGTATGTTTAGGTGCTGGTGCAGCTGCCGTTGCATGTATGGAGCTGCTTATTAAGTGTGGCGCAATGCGTG AGAAGATCTACATGCTGGATCGTAAAGGTGTGATTCATACTCGTCGTGACGATATTAATGAGTACAAACAACGTTTTGCA AACAATACCGATAAGCGCACACTGCAAGATGTTATCGAAGGTGCCGATTTATTCTTGGGTGTATCTGGTCCAAATTTATT AGATGCAGAAGATCTGAAGCTAATGGCTGATAAACCAGTTGTGTTTGCATGTTCAAATCCAGATCCTGAAATTAAACCTG AATTGGCTCATGAAGTTCGTTCTGACTTAATCATGGGTACAGGCCGTTCTGATTATCCAAACCAAGTAAATAATGTGCTT TGTTTCCCATTTATCTTCCGTGGTGCGCTAGATGTGCGTGCAAGTGAAATTAATGATGAAATGAAGCTAGCTGCTGTTGA GGCTATTCGTCAATTAGCTAAAGAAGAAGTACCCGTTGAGGTATTAAAAGCCGCTGGCGTTGAATCCTTGACATTTGGCT CTGACTATATCATTCCAAAACCAATGGATCCTCGTCTACTTCCACGAGTTGCTAAAGCGGTAGCACAAGCTGCTGTTGAC TCCGGTGTCGCTCGTATAGAAATGCCTAAAGGATACATGGAAGCGTAA
Upstream 100 bases:
>100_bases TGTTGGTACGATCTGTAAGCAAAGGCTATGAAGTTTGAGCTAGATCAACTAATATAGAGGTTTACTATTTTGACGTTACC TTTTAAATCAGGAAACCATC
Downstream 100 bases:
>100_bases TTCGCTTTATCTTTTATGTAGAAAAGGCTTCTAACTAATTAATTAAGTTAGAAGCTTTTTTTTATTTAGGAAAGAAATTA TTTTTGACTTTCTAAAGCTT
Product: fused malic enzyme oxidoreductase/ phosphotransacetylase
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSEEFRKQALDYHAYPTPGKIEVALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKYTSKGNMVAVISNGTAILGLG NLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFVDTVANIADTFGGINLEDIKAPDCFEIERRLIEICDVPVFH DDQHGTAIVTAAGMLNAIELQGKKLEDAIIVCLGAGAAAVACMELLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA NNTDKRTLQDVIEGADLFLGVSGPNLLDAEDLKLMADKPVVFACSNPDPEIKPELAHEVRSDLIMGTGRSDYPNQVNNVL CFPFIFRGALDVRASEINDEMKLAAVEAIRQLAKEEVPVEVLKAAGVESLTFGSDYIIPKPMDPRLLPRVAKAVAQAAVD SGVARIEMPKGYMEA
Sequences:
>Translated_415_residues MSEEFRKQALDYHAYPTPGKIEVALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKYTSKGNMVAVISNGTAILGLG NLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFVDTVANIADTFGGINLEDIKAPDCFEIERRLIEICDVPVFH DDQHGTAIVTAAGMLNAIELQGKKLEDAIIVCLGAGAAAVACMELLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA NNTDKRTLQDVIEGADLFLGVSGPNLLDAEDLKLMADKPVVFACSNPDPEIKPELAHEVRSDLIMGTGRSDYPNQVNNVL CFPFIFRGALDVRASEINDEMKLAAVEAIRQLAKEEVPVEVLKAAGVESLTFGSDYIIPKPMDPRLLPRVAKAVAQAAVD SGVARIEMPKGYMEA >Mature_414_residues SEEFRKQALDYHAYPTPGKIEVALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKYTSKGNMVAVISNGTAILGLGN LGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFVDTVANIADTFGGINLEDIKAPDCFEIERRLIEICDVPVFHD DQHGTAIVTAAGMLNAIELQGKKLEDAIIVCLGAGAAAVACMELLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFAN NTDKRTLQDVIEGADLFLGVSGPNLLDAEDLKLMADKPVVFACSNPDPEIKPELAHEVRSDLIMGTGRSDYPNQVNNVLC FPFIFRGALDVRASEINDEMKLAAVEAIRQLAKEEVPVEVLKAAGVESLTFGSDYIIPKPMDPRLLPRVAKAVAQAAVDS GVARIEMPKGYMEA
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=355, Percent_Identity=28.169014084507, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI62420880, Length=355, Percent_Identity=28.169014084507, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI239049447, Length=355, Percent_Identity=28.169014084507, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI4505143, Length=360, Percent_Identity=25.8333333333333, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI4505145, Length=354, Percent_Identity=27.9661016949153, Blast_Score=73, Evalue=5e-13, Organism=Escherichia coli, GI1788806, Length=406, Percent_Identity=59.1133004926108, Blast_Score=474, Evalue=1e-135, Organism=Escherichia coli, GI87081919, Length=503, Percent_Identity=23.8568588469185, Blast_Score=84, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17537199, Length=415, Percent_Identity=25.3012048192771, Blast_Score=75, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6322823, Length=294, Percent_Identity=26.530612244898, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI78707242, Length=348, Percent_Identity=27.0114942528736, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI78707238, Length=348, Percent_Identity=27.0114942528736, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI78707240, Length=348, Percent_Identity=27.0114942528736, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI281362674, Length=401, Percent_Identity=25.6857855361596, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI281362672, Length=401, Percent_Identity=25.6857855361596, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21356279, Length=401, Percent_Identity=25.6857855361596, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24646388, Length=349, Percent_Identity=26.9340974212034, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646386, Length=350, Percent_Identity=27.1428571428571, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281363503, Length=366, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI281363505, Length=366, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI78707236, Length=366, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI78707232, Length=366, Percent_Identity=24.5901639344262, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 45273; Mature: 45141
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEEFRKQALDYHAYPTPGKIEVALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKY CCHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHEE TSKGNMVAVISNGTAILGLGNLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFV CCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH DTVANIADTFGGINLEDIKAPDCFEIERRLIEICDVPVFHDDQHGTAIVTAAGMLNAIEL HHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEEEHHHHHHHHHH QGKKLEDAIIVCLGAGAAAVACMELLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHC NNTDKRTLQDVIEGADLFLGVSGPNLLDAEDLKLMADKPVVFACSNPDPEIKPELAHEVR CCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHEEECCCEEEEECCCCCCCCHHHHHHHH SDLIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASEINDEMKLAAVEAIRQLAKEEVPVE HHHEECCCCCCCCHHHHCEEEHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH VLKAAGVESLTFGSDYIIPKPMDPRLLPRVAKAVAQAAVDSGVARIEMPKGYMEA HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC >Mature Secondary Structure SEEFRKQALDYHAYPTPGKIEVALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKY CHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHEE TSKGNMVAVISNGTAILGLGNLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFV CCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH DTVANIADTFGGINLEDIKAPDCFEIERRLIEICDVPVFHDDQHGTAIVTAAGMLNAIEL HHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEEEHHHHHHHHHH QGKKLEDAIIVCLGAGAAAVACMELLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHC NNTDKRTLQDVIEGADLFLGVSGPNLLDAEDLKLMADKPVVFACSNPDPEIKPELAHEVR CCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHEEECCCEEEEECCCCCCCCHHHHHHHH SDLIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASEINDEMKLAAVEAIRQLAKEEVPVE HHHEECCCCCCCCHHHHCEEEHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH VLKAAGVESLTFGSDYIIPKPMDPRLLPRVAKAVAQAAVDSGVARIEMPKGYMEA HHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]