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The map label for this gene is yhcM [H]

Identifier: 59712830

GI number: 59712830

Start: 2493599

End: 2494744

Strand: Reverse

Name: yhcM [H]

Synonym: VF_2223

Alternate gene names: 59712830

Gene position: 2494744-2493599 (Counterclockwise)

Preceding gene: 59712834

Following gene: 59712829

Centisome position: 86.1

GC content: 36.82

Gene sequence:

>1146_bases
ATGAAGGGAGTCAATCAACAAAAGAAAAGATTAAAAGTGATGACACCATTAGAAAAATATCAGCAAGACCTCAATCAAGA
GGGGTTTATGCATGATAGCGCTCAACGAAATGCTGTAGAACATCTTGATGATTTATATCGACGTTTTTTAGAATTAAAAG
TTCCTGAAGAGCCAGCAAAAAAATCATGGAAACGATTTTTTAAAAAAGAGAAACCACAAAAGTTAACTCCAGAAAAAGGG
TTGTATTTTTGGGGCGGTGTTGGTCGAGGGAAAACGTATTTAGTCGATACCTTTTATGATGCTTTACCTACAGAAAGAAA
GATGCGGATTCATTTTCATCGTTTTATGCAGCGAGTGCATGATGAATTGGGAGAGCTAAAGCAGCAGTCTGATCCTTTAC
TTATTGTTGCTGATAAATTTAAACAAGAAACCGACATTATCTGTTTTGATGAGTTTTTTGTTTCTGACATTACTGATGCG
ATGATTTTAGCAACGTTGCTAGAGGCGTTGTTCGCTAGAGGGATAACGTTAGTCGCTACGTCGAATATATTACCTCAAGA
TTTATACCGTAATGGGCTACAGCGAGCTCGCTTTTTACCTGCTATTTCTCTAATTGAGCAGCATTGTGACATTATTAATG
TCGATAGTGGTGTTGATTATCGCCTTAGAACGCTAGAGCAGGCAGAAATATACCATTACCCATTAGATAGCGATGCTGAA
ACTAATATGAAAGGTTATTTCTTGCAGTTAGCTTCTGGTTGCGATTACGAATCGACTCAAATAGAAATTAACCATCGTCT
TATAGAGGTAAAAGCCGAAGGGGATGGTGTGGTTCATTTTGATTTTGCATCTCTATGTGAAAGTGCTCGTAGTCAGCACG
ATTACATTGAACTCTCTCGTTTATATCATACGGTTTTGCTCTCTAACGTAAAAATAATGGGAGAGGTAAATGATGATGCT
GCTCGTCGTTTTATCGCTATGGTTGATGAATTTTATGAGCGAAATGTAAAATTGATAATCTCAGCTGAGGTAGATTTAAC
CTCTATATACCAAAAAGGCCGTTTAACGTTTGAATTTCAACGTTGTCAATCAAGATTGATTGAAATGCAAAGCCATGAGT
ACTTATCAAAAGAACATTTATCTTAG

Upstream 100 bases:

>100_bases
TACCGTTTTTTATTAATATGAGTCGGCTGATTAACGAGTTAATCTGATTGGTGTAACTGTGAGTTAGCCCACTCATAGGG
TGTGTTGAGAACATGCTACT

Downstream 100 bases:

>100_bases
TCAAAGAAAGGGACTTTTTGGTGATTTAAGAGCTTCATTTACTGTGATGGAGCTCAAAACTCAGTTTTTTTAATTTTTTT
TGCCGATATGTGAAATATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKGVNQQKKRLKVMTPLEKYQQDLNQEGFMHDSAQRNAVEHLDDLYRRFLELKVPEEPAKKSWKRFFKKEKPQKLTPEKG
LYFWGGVGRGKTYLVDTFYDALPTERKMRIHFHRFMQRVHDELGELKQQSDPLLIVADKFKQETDIICFDEFFVSDITDA
MILATLLEALFARGITLVATSNILPQDLYRNGLQRARFLPAISLIEQHCDIINVDSGVDYRLRTLEQAEIYHYPLDSDAE
TNMKGYFLQLASGCDYESTQIEINHRLIEVKAEGDGVVHFDFASLCESARSQHDYIELSRLYHTVLLSNVKIMGEVNDDA
ARRFIAMVDEFYERNVKLIISAEVDLTSIYQKGRLTFEFQRCQSRLIEMQSHEYLSKEHLS

Sequences:

>Translated_381_residues
MKGVNQQKKRLKVMTPLEKYQQDLNQEGFMHDSAQRNAVEHLDDLYRRFLELKVPEEPAKKSWKRFFKKEKPQKLTPEKG
LYFWGGVGRGKTYLVDTFYDALPTERKMRIHFHRFMQRVHDELGELKQQSDPLLIVADKFKQETDIICFDEFFVSDITDA
MILATLLEALFARGITLVATSNILPQDLYRNGLQRARFLPAISLIEQHCDIINVDSGVDYRLRTLEQAEIYHYPLDSDAE
TNMKGYFLQLASGCDYESTQIEINHRLIEVKAEGDGVVHFDFASLCESARSQHDYIELSRLYHTVLLSNVKIMGEVNDDA
ARRFIAMVDEFYERNVKLIISAEVDLTSIYQKGRLTFEFQRCQSRLIEMQSHEYLSKEHLS
>Mature_381_residues
MKGVNQQKKRLKVMTPLEKYQQDLNQEGFMHDSAQRNAVEHLDDLYRRFLELKVPEEPAKKSWKRFFKKEKPQKLTPEKG
LYFWGGVGRGKTYLVDTFYDALPTERKMRIHFHRFMQRVHDELGELKQQSDPLLIVADKFKQETDIICFDEFFVSDITDA
MILATLLEALFARGITLVATSNILPQDLYRNGLQRARFLPAISLIEQHCDIINVDSGVDYRLRTLEQAEIYHYPLDSDAE
TNMKGYFLQLASGCDYESTQIEINHRLIEVKAEGDGVVHFDFASLCESARSQHDYIELSRLYHTVLLSNVKIMGEVNDDA
ARRFIAMVDEFYERNVKLIISAEVDLTSIYQKGRLTFEFQRCQSRLIEMQSHEYLSKEHLS

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=409, Percent_Identity=33.4963325183374, Blast_Score=221, Evalue=7e-58,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=55.4666666666667, Blast_Score=425, Evalue=1e-120,
Organism=Caenorhabditis elegans, GI17505769, Length=356, Percent_Identity=35.9550561797753, Blast_Score=233, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6320783, Length=407, Percent_Identity=29.7297297297297, Blast_Score=172, Evalue=7e-44,
Organism=Drosophila melanogaster, GI20129913, Length=426, Percent_Identity=32.1596244131455, Blast_Score=184, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44513; Mature: 44513

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGVNQQKKRLKVMTPLEKYQQDLNQEGFMHDSAQRNAVEHLDDLYRRFLELKVPEEPAK
CCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
KSWKRFFKKEKPQKLTPEKGLYFWGGVGRGKTYLVDTFYDALPTERKMRIHFHRFMQRVH
HHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
DELGELKQQSDPLLIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFARGITLVAT
HHHHHHHHCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
SNILPQDLYRNGLQRARFLPAISLIEQHCDIINVDSGVDYRLRTLEQAEIYHYPLDSDAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHEEECCCCCCCC
TNMKGYFLQLASGCDYESTQIEINHRLIEVKAEGDGVVHFDFASLCESARSQHDYIELSR
CCCHHHHEEECCCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHH
LYHTVLLSNVKIMGEVNDDAARRFIAMVDEFYERNVKLIISAEVDLTSIYQKGRLTFEFQ
HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCCCEEHHH
RCQSRLIEMQSHEYLSKEHLS
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKGVNQQKKRLKVMTPLEKYQQDLNQEGFMHDSAQRNAVEHLDDLYRRFLELKVPEEPAK
CCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
KSWKRFFKKEKPQKLTPEKGLYFWGGVGRGKTYLVDTFYDALPTERKMRIHFHRFMQRVH
HHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHH
DELGELKQQSDPLLIVADKFKQETDIICFDEFFVSDITDAMILATLLEALFARGITLVAT
HHHHHHHHCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
SNILPQDLYRNGLQRARFLPAISLIEQHCDIINVDSGVDYRLRTLEQAEIYHYPLDSDAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHEEECCCCCCCC
TNMKGYFLQLASGCDYESTQIEINHRLIEVKAEGDGVVHFDFASLCESARSQHDYIELSR
CCCHHHHEEECCCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHH
LYHTVLLSNVKIMGEVNDDAARRFIAMVDEFYERNVKLIISAEVDLTSIYQKGRLTFEFQ
HHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCCCEEHHH
RCQSRLIEMQSHEYLSKEHLS
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]