Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 59712778

GI number: 59712778

Start: 2440284

End: 2441054

Strand: Reverse

Name: yadH [H]

Synonym: VF_2171

Alternate gene names: 59712778

Gene position: 2441054-2440284 (Counterclockwise)

Preceding gene: 59712779

Following gene: 59712770

Centisome position: 84.25

GC content: 35.67

Gene sequence:

>771_bases
ATGATGAATTTATATTGGACAGCATTTAAAAGTCTTATCTCAAAAGAAATAAACCGTTTTGTTCGTATTTGGGTTCAGAC
CTTAGTTCCACCAGCAATAACCATGACGCTCTATTTTATTATTTTTGGTAATTTAATCGGGTCACGTATTGGTGAAATGA
GTGGCTTTAGTTATATGGAATATATTGTTCCTGGTTTGATTATGATGTCAGTTATTACTAACTCATATTCAAACGTAGCT
TCTTCTTTCTTTAGTTCTAAGTTTCAAAAGAACATAGAAGAGTTACTTGTTGCTCCTGTACCTAACTACATTATTATCGC
TGGGTTTGTTGGTGGTGGTGTTGTTCGAGGCTTGTTGGTTGGTGCGTTAGTTACTTGTGTGTCTCTATTTTTCGTTGATA
TTCAAATTGCTCATCTTGGTGTGATCATGCTAACGGTATTAATGACATCGATTGTCTTTTCATTGGGTGGATTGATTAAT
GCTGTTTTTGCTAGAACATTCGATGATATTAGTATTATTCCAACGTTTGTATTAACGCCATTAACGTACTTAGGTGGTGT
CTTTTACTCGATAAGTCTATTACCTGAATTCTGGCAAGGGGTTTCTAAGTTAAACCCGATAGTTTATATGGTAAATGCGT
TCCGTTACGGTTTCTTAGGTGTCTCTGATGTAGGGATCGGTACGGCATTTGCTGTGTTGTCTGTATTTATTATTGCTTTA
TATAGTATTGCTTGGCACTTGGTTTCTAAGGGGATTGGATTAAGAAGTTAG

Upstream 100 bases:

>100_bases
AATTAAATCATCAAGGTATTAATGTGCTTTCTATGAGGAATAAAGCAAATCGATTAGAAGAATTGTTTGTCAGTATTGTT
CGTTCAGGAGAAGCAAAATA

Downstream 100 bases:

>100_bases
AGACCATATATGTAAATCATAGATGAAAAAAGGGCTGAAGATAGTGATTATCTTCAGCCCTTTTATTTTTCTTTTAGAAA
AGATTACTCTTCTTCGTCGT

Product: ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MMNLYWTAFKSLISKEINRFVRIWVQTLVPPAITMTLYFIIFGNLIGSRIGEMSGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSSKFQKNIEELLVAPVPNYIIIAGFVGGGVVRGLLVGALVTCVSLFFVDIQIAHLGVIMLTVLMTSIVFSLGGLIN
AVFARTFDDISIIPTFVLTPLTYLGGVFYSISLLPEFWQGVSKLNPIVYMVNAFRYGFLGVSDVGIGTAFAVLSVFIIAL
YSIAWHLVSKGIGLRS

Sequences:

>Translated_256_residues
MMNLYWTAFKSLISKEINRFVRIWVQTLVPPAITMTLYFIIFGNLIGSRIGEMSGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSSKFQKNIEELLVAPVPNYIIIAGFVGGGVVRGLLVGALVTCVSLFFVDIQIAHLGVIMLTVLMTSIVFSLGGLIN
AVFARTFDDISIIPTFVLTPLTYLGGVFYSISLLPEFWQGVSKLNPIVYMVNAFRYGFLGVSDVGIGTAFAVLSVFIIAL
YSIAWHLVSKGIGLRS
>Mature_256_residues
MMNLYWTAFKSLISKEINRFVRIWVQTLVPPAITMTLYFIIFGNLIGSRIGEMSGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSSKFQKNIEELLVAPVPNYIIIAGFVGGGVVRGLLVGALVTCVSLFFVDIQIAHLGVIMLTVLMTSIVFSLGGLIN
AVFARTFDDISIIPTFVLTPLTYLGGVFYSISLLPEFWQGVSKLNPIVYMVNAFRYGFLGVSDVGIGTAFAVLSVFIIAL
YSIAWHLVSKGIGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=256, Percent_Identity=71.09375, Blast_Score=379, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28113; Mature: 28113

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]