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The map label for this gene is yhcC [H]

Identifier: 59712730

GI number: 59712730

Start: 2360108

End: 2361049

Strand: Reverse

Name: yhcC [H]

Synonym: VF_2123

Alternate gene names: 59712730

Gene position: 2361049-2360108 (Counterclockwise)

Preceding gene: 59712739

Following gene: 59712729

Centisome position: 81.48

GC content: 39.7

Gene sequence:

>942_bases
ATGCAACTTCACGAATTAGCAAATACTTTTGGACAAGATTTACAACGCAGATATGGCGAAAAAGTACATAAACTGACGTT
GCACGGTGGATTTAGCTGCCCGAATCGAGATGGAACAATAGGTAAAGGTGGCTGTACATTTTGTAATGTTGCTTCATTTG
CTGACGAACAAGAACAATTTAAATCGATTCATGATCAATTGACCGATAGAGCGGGTGAAGTTCAGCGTGCGAAAAAGTAT
TTGGCTTATTTTCAAGCTTACACGAGTACTTTTGCTGAAGTGCAAGTTTTAAAAAATATGTACGAAGAGGCATTAAAAGC
TGCCAATATTGTCGGGCTTTGTGTTGGTACTCGTCCTGATTGTGTTCCTGATGCGGTATTAGATTTACTCAAAGGTTATG
TCGATGATGGCTATGAAGTATGGTTGGAGTTAGGCCTACAAACCGCGAATGATAAAACATTGAAACGTATTAACCGTGGA
CATGATTTTGCTTGTTATGATGCCATTACTCGTAAAGCTCGTTCTTTAGGTATTAAAGTTTGTACGCATTTAATTATTGG
ATTACCTGGTGATACTAGAGATGATAACCGTCAAACGTTAGATAAAGTATTAGCGACAGGAACTGATGGTATTAAATTGC
ACCCTTTGCATATCGTTGAAGGTAGTACACTGGCGAAAGCATGGCGTGCAGGCAAGCTCGATGCGCCAGAAATGGATGAA
TATGTTGATATTGCTTGTGAGCTTATTCGTTTAACGCCACCTGAAGTGGTTTATCACCGAGTGTCAGCAACCGCGCGTCA
ACCAACACTATTATCGCCATTGTGGTGTGAACCAAGATGGTTAGGATTAACCAATGTTGGTATGGCATTAAATAATAGTG
GTCCTCAAGGTTCATTGATTGATCAACCTTTCAAATATACTGCTCCAGTGCTGAAAAAATAA

Upstream 100 bases:

>100_bases
TACGGTCTTTTTTTACAAACGAGTTAGCAACTTTCATAAATAACAAGAAAACTTCTTTTTATTTGTAAAGTAAGTGCTTG
ATTTAATACTGGTTAATCCA

Downstream 100 bases:

>100_bases
CTCAAATGCATCTAACCCTGATATTATTTATGTGAATATTATCAGGGTATGTTTATGAAGCAGTTAAAAATTCTCGCGCA
ATTTTATGTCGATCTTATGG

Product: Fe-S oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQLHELANTFGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGKGGCTFCNVASFADEQEQFKSIHDQLTDRAGEVQRAKKY
LAYFQAYTSTFAEVQVLKNMYEEALKAANIVGLCVGTRPDCVPDAVLDLLKGYVDDGYEVWLELGLQTANDKTLKRINRG
HDFACYDAITRKARSLGIKVCTHLIIGLPGDTRDDNRQTLDKVLATGTDGIKLHPLHIVEGSTLAKAWRAGKLDAPEMDE
YVDIACELIRLTPPEVVYHRVSATARQPTLLSPLWCEPRWLGLTNVGMALNNSGPQGSLIDQPFKYTAPVLKK

Sequences:

>Translated_313_residues
MQLHELANTFGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGKGGCTFCNVASFADEQEQFKSIHDQLTDRAGEVQRAKKY
LAYFQAYTSTFAEVQVLKNMYEEALKAANIVGLCVGTRPDCVPDAVLDLLKGYVDDGYEVWLELGLQTANDKTLKRINRG
HDFACYDAITRKARSLGIKVCTHLIIGLPGDTRDDNRQTLDKVLATGTDGIKLHPLHIVEGSTLAKAWRAGKLDAPEMDE
YVDIACELIRLTPPEVVYHRVSATARQPTLLSPLWCEPRWLGLTNVGMALNNSGPQGSLIDQPFKYTAPVLKK
>Mature_313_residues
MQLHELANTFGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGKGGCTFCNVASFADEQEQFKSIHDQLTDRAGEVQRAKKY
LAYFQAYTSTFAEVQVLKNMYEEALKAANIVGLCVGTRPDCVPDAVLDLLKGYVDDGYEVWLELGLQTANDKTLKRINRG
HDFACYDAITRKARSLGIKVCTHLIIGLPGDTRDDNRQTLDKVLATGTDGIKLHPLHIVEGSTLAKAWRAGKLDAPEMDE
YVDIACELIRLTPPEVVYHRVSATARQPTLLSPLWCEPRWLGLTNVGMALNNSGPQGSLIDQPFKYTAPVLKK

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=304, Percent_Identity=68.75, Blast_Score=450, Evalue=1e-128,
Organism=Caenorhabditis elegans, GI133955098, Length=167, Percent_Identity=26.9461077844311, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6325171, Length=166, Percent_Identity=25.3012048192771, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 34749; Mature: 34749

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLHELANTFGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGKGGCTFCNVASFADEQEQF
CCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KSIHDQLTDRAGEVQRAKKYLAYFQAYTSTFAEVQVLKNMYEEALKAANIVGLCVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCC
CVPDAVLDLLKGYVDDGYEVWLELGLQTANDKTLKRINRGHDFACYDAITRKARSLGIKV
CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
CTHLIIGLPGDTRDDNRQTLDKVLATGTDGIKLHPLHIVEGSTLAKAWRAGKLDAPEMDE
HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCCCCCCHHH
YVDIACELIRLTPPEVVYHRVSATARQPTLLSPLWCEPRWLGLTNVGMALNNSGPQGSLI
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCEECCCCCCCCCC
DQPFKYTAPVLKK
CCCCHHCCHHHCC
>Mature Secondary Structure
MQLHELANTFGQDLQRRYGEKVHKLTLHGGFSCPNRDGTIGKGGCTFCNVASFADEQEQF
CCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KSIHDQLTDRAGEVQRAKKYLAYFQAYTSTFAEVQVLKNMYEEALKAANIVGLCVGTRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCC
CVPDAVLDLLKGYVDDGYEVWLELGLQTANDKTLKRINRGHDFACYDAITRKARSLGIKV
CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
CTHLIIGLPGDTRDDNRQTLDKVLATGTDGIKLHPLHIVEGSTLAKAWRAGKLDAPEMDE
HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCCCCCCHHH
YVDIACELIRLTPPEVVYHRVSATARQPTLLSPLWCEPRWLGLTNVGMALNNSGPQGSLI
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCEECCCCCCCCCC
DQPFKYTAPVLKK
CCCCHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]