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The map label for this gene is nlpD [H]

Identifier: 59712675

GI number: 59712675

Start: 2304291

End: 2305289

Strand: Reverse

Name: nlpD [H]

Synonym: VF_2068

Alternate gene names: 59712675

Gene position: 2305289-2304291 (Counterclockwise)

Preceding gene: 59712676

Following gene: 59712674

Centisome position: 79.56

GC content: 41.24

Gene sequence:

>999_bases
ATGAGAAAAATGATTATCAACCTTATTTCTATACGCTTATGGTTAATGGCTGCTGTTGTTAGCTTATTACTTTCTGGTTG
TTCTATGGGACCACATCGCCCTGCACCAGTGTCGAGTGTTAATAGCTCTAGTTCGGCATATAACGGAGCCGAGCGAGGCA
GTTATCGCGGCAGTTATTACACCGTAGAGAAAGGTGATACTCTTTATTTTATCTCTTATGTTACAAATAAAGACGTAAAA
GAGCTCATTGCATATAACGAGCTTAAAGCGCCTTATATGATTCATCCTGGCCAAAAAATAAAATTGTGGGGGCCTAAATA
TATTGCTCCTGCTTATGGCAGTGACGGTCATTCAGTCACACCATCTAATTCGTCTTCAAGCTCGACGGCGACAGCGGTTG
CCGTTGTTCCTGTCGCAACAAATAAGCCTGCTCCTAAGCCAAAACCAACCACAACGAGTGCTAAAAAAACATCAAGTGTA
CAAAAAGAAAGCACAAAAAAGGTTGAAAACAGCAAACCTAAGGAGTATGTTAATTCTAACAAAACGATAACATCTTCGAA
ACCTAAACCGGTTGCTAAGCCAAAACCAACTCCTAAACCGAAGCCGAAACCAGTACAACAAAAATCGGACAAGGTGGATT
CTTGGTTATGGCCAACAAAAGGTCGAATCATCGCTAAATTCTCTACAGGAGACCAAGGAAACAAAGGGATCGATATTGCA
GGCCAGCGTGGTCAAGATATCATCTCAACAGCAAAAGGAACTGTGGTCTATGCAGGTAATGCATTAAGAGGGTACGGTAA
CTTAATTATCATTAAACATAACGATGATTACTTAAGTGCTTATGCTCATAACGAAGCATTATTTGTGAAAGAAGGCCAAA
ACGTCACAGCGGGACAAAAAATCGCGTCGATGGGAAGCTCTAGTACGAGCAGTGTACGTTTGCATTTTGAGATCCGCTTT
AGAGGGAAATCGGTAAATCCACAGAGGTATTTACCATAA

Upstream 100 bases:

>100_bases
CAGTTATTACGAATTACTCGTCAGGGAGAGGAATTTTTCTCTGAAGTGATTGAAGAGGTTCGTTTTGTGCCTTTAGTTGC
GGGTGAATTAGCATAATATA

Downstream 100 bases:

>100_bases
AAGGATGACATAGCTGAGTTGTAATGTCTTGCTGGCTCGCCATGGGGAGGCGCTATGAGTAAAAGCAATGCAGTAACTAA
AGAAGTTGAAGAGTTCGATT

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRKMIINLISIRLWLMAAVVSLLLSGCSMGPHRPAPVSSVNSSSSAYNGAERGSYRGSYYTVEKGDTLYFISYVTNKDVK
ELIAYNELKAPYMIHPGQKIKLWGPKYIAPAYGSDGHSVTPSNSSSSSTATAVAVVPVATNKPAPKPKPTTTSAKKTSSV
QKESTKKVENSKPKEYVNSNKTITSSKPKPVAKPKPTPKPKPKPVQQKSDKVDSWLWPTKGRIIAKFSTGDQGNKGIDIA
GQRGQDIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNEALFVKEGQNVTAGQKIASMGSSSTSSVRLHFEIRF
RGKSVNPQRYLP

Sequences:

>Translated_332_residues
MRKMIINLISIRLWLMAAVVSLLLSGCSMGPHRPAPVSSVNSSSSAYNGAERGSYRGSYYTVEKGDTLYFISYVTNKDVK
ELIAYNELKAPYMIHPGQKIKLWGPKYIAPAYGSDGHSVTPSNSSSSSTATAVAVVPVATNKPAPKPKPTTTSAKKTSSV
QKESTKKVENSKPKEYVNSNKTITSSKPKPVAKPKPTPKPKPKPVQQKSDKVDSWLWPTKGRIIAKFSTGDQGNKGIDIA
GQRGQDIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNEALFVKEGQNVTAGQKIASMGSSSTSSVRLHFEIRF
RGKSVNPQRYLP
>Mature_332_residues
MRKMIINLISIRLWLMAAVVSLLLSGCSMGPHRPAPVSSVNSSSSAYNGAERGSYRGSYYTVEKGDTLYFISYVTNKDVK
ELIAYNELKAPYMIHPGQKIKLWGPKYIAPAYGSDGHSVTPSNSSSSSTATAVAVVPVATNKPAPKPKPTTTSAKKTSSV
QKESTKKVENSKPKEYVNSNKTITSSKPKPVAKPKPTPKPKPKPVQQKSDKVDSWLWPTKGRIIAKFSTGDQGNKGIDIA
GQRGQDIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNEALFVKEGQNVTAGQKIASMGSSSTSSVRLHFEIRF
RGKSVNPQRYLP

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=286, Percent_Identity=45.8041958041958, Blast_Score=233, Evalue=9e-63,
Organism=Escherichia coli, GI87082174, Length=318, Percent_Identity=38.9937106918239, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=35.8333333333333, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 35992; Mature: 35992

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKMIINLISIRLWLMAAVVSLLLSGCSMGPHRPAPVSSVNSSSSAYNGAERGSYRGSYY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
TVEKGDTLYFISYVTNKDVKELIAYNELKAPYMIHPGQKIKLWGPKYIAPAYGSDGHSVT
EEECCCEEEEEEEECCCHHHHHHHHHHCCCCEEECCCCEEEEECCCEECCCCCCCCCEEC
PSNSSSSSTATAVAVVPVATNKPAPKPKPTTTSAKKTSSVQKESTKKVENSKPKEYVNSN
CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
KTITSSKPKPVAKPKPTPKPKPKPVQQKSDKVDSWLWPTKGRIIAKFSTGDQGNKGIDIA
CEEECCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCCCEEEEEECCCCCCCCCEEEC
GQRGQDIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNEALFVKEGQNVTAGQK
CCCCCHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCHHHH
IASMGSSSTSSVRLHFEIRFRGKSVNPQRYLP
HHHCCCCCCCEEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MRKMIINLISIRLWLMAAVVSLLLSGCSMGPHRPAPVSSVNSSSSAYNGAERGSYRGSYY
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
TVEKGDTLYFISYVTNKDVKELIAYNELKAPYMIHPGQKIKLWGPKYIAPAYGSDGHSVT
EEECCCEEEEEEEECCCHHHHHHHHHHCCCCEEECCCCEEEEECCCEECCCCCCCCCEEC
PSNSSSSSTATAVAVVPVATNKPAPKPKPTTTSAKKTSSVQKESTKKVENSKPKEYVNSN
CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
KTITSSKPKPVAKPKPTPKPKPKPVQQKSDKVDSWLWPTKGRIIAKFSTGDQGNKGIDIA
CEEECCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCCCEEEEEECCCCCCCCCEEEC
GQRGQDIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNEALFVKEGQNVTAGQK
CCCCCHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCHHHH
IASMGSSSTSSVRLHFEIRFRGKSVNPQRYLP
HHHCCCCCCCEEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]