| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59712630
Identifier: 59712630
GI number: 59712630
Start: 2254936
End: 2255322
Strand: Reverse
Name: 59712630
Synonym: VF_2023
Alternate gene names: NA
Gene position: 2255322-2254936 (Counterclockwise)
Preceding gene: 59712631
Following gene: 59712629
Centisome position: 77.84
GC content: 41.6
Gene sequence:
>387_bases ATGAGTCATTTTAATTTAAACGCATTGACGGCCCCAATGAATACAAAAGAAGGGTTAACTCATGCCGTGCTTCAAAGTGT ATTGAATCATTCAGAATCAACAGCAAATGATCGCGCGCGAATGGATAGCGCAGAACGTGGCGGATGTTGGAGTGATGAAT TTGTTCACGGTGTCGGTTCACGAGACTGGACATTAAAACGTGAAAAATTAACCGAGCAAACGGCAGGAAGAGCGAAGCGA TTTTACGAAGAAGCGCTGGCTTGGTTAGTGAATGAAAATCACGTTAAAACAGTAACGGTAAATGTTGTTAAGTTATCAGC CACTAAGCTTGGTAGAACCGTGATATTAACGTTAAACGATGGCTCAAAAATAGAGGTTAAGCCATGA
Upstream 100 bases:
>100_bases ATTTGGCTGAGGCTATCGCTAATGCTGTTATTGATGAAATAACAAGTAACGCAATGGTTATTGTTGATAAAGGCAGTTCA GCCGGAACATATAAAGTGTC
Downstream 100 bases:
>100_bases GTACGCAGAGAAGTTTAAAGTCATTAATTGATAGAGCGACATCGACGCTTATTGCTAAAACAGGGCAACATAACCCAGCG ATTGATGCGATAGCATGTGC
Product: phage protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MSHFNLNALTAPMNTKEGLTHAVLQSVLNHSESTANDRARMDSAERGGCWSDEFVHGVGSRDWTLKREKLTEQTAGRAKR FYEEALAWLVNENHVKTVTVNVVKLSATKLGRTVILTLNDGSKIEVKP
Sequences:
>Translated_128_residues MSHFNLNALTAPMNTKEGLTHAVLQSVLNHSESTANDRARMDSAERGGCWSDEFVHGVGSRDWTLKREKLTEQTAGRAKR FYEEALAWLVNENHVKTVTVNVVKLSATKLGRTVILTLNDGSKIEVKP >Mature_127_residues SHFNLNALTAPMNTKEGLTHAVLQSVLNHSESTANDRARMDSAERGGCWSDEFVHGVGSRDWTLKREKLTEQTAGRAKRF YEEALAWLVNENHVKTVTVNVVKLSATKLGRTVILTLNDGSKIEVKP
Specific function: Unknown
COG id: COG4381
COG function: function code S; Mu-like prophage protein gp46
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14233; Mature: 14102
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHFNLNALTAPMNTKEGLTHAVLQSVLNHSESTANDRARMDSAERGGCWSDEFVHGVGS CCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCCC RDWTLKREKLTEQTAGRAKRFYEEALAWLVNENHVKTVTVNVVKLSATKLGRTVILTLND CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCEEEEEECC GSKIEVKP CCEEEECC >Mature Secondary Structure SHFNLNALTAPMNTKEGLTHAVLQSVLNHSESTANDRARMDSAERGGCWSDEFVHGVGS CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCCC RDWTLKREKLTEQTAGRAKRFYEEALAWLVNENHVKTVTVNVVKLSATKLGRTVILTLND CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCEEEEEECC GSKIEVKP CCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA