| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59712492
Identifier: 59712492
GI number: 59712492
Start: 2117424
End: 2118560
Strand: Direct
Name: 59712492
Synonym: VF_1885
Alternate gene names: NA
Gene position: 2117424-2118560 (Clockwise)
Preceding gene: 59712489
Following gene: 59712493
Centisome position: 73.08
GC content: 36.59
Gene sequence:
>1137_bases ATGAAAAAAATAATTTATTTAATTACCTCTATATTAACAATGAGTTACATTGCACCGGCACATGCTGAGTGGTTTGAGGT AACAGGTTCAGCAAGTGTCTTAACCAGTAAAGATGCGGCAAGAGCTAATGCACTAGAAGATGCCGCTTATCAAGCAATGC TGTTTTCTGGGGCCGATATTAGCCGCCTAAAGGATCTTAAGATCTTTTTAGAGAATGATAATAAACGTTATCAATTTAGC GGTAGTGAAATTCGTAGCATCGAAGTGGTTAAAGAAAAGAAGAAAAACGACAAAATTTATATTACAGCTCGTATTGATAT CTACCCTTCGGCAAACAGTTGCCATATAGGGCAATACAAGAAGACGTTTATGACGAGTGAAATCACGATTGACTCACCAC AACAAGCGGTAATGGGTAAGGTATATCATTTAGGTGAAGACTTAAGTACGATATTTTCACGTCAATTAGATAAAGAATCA CAAAGCTTTGTATCAGTAGGTACTTCTCATATTCGTATTGATAAACGTCAACCAGAAGTCGCAAAAATGATAGCGGAAGA TCATGGTGCTCAGTACATATTTTCAGGAAGCATTACTGATTTAAGTGCCACGATTGAACAGAATTTACTAAAGAAAGATA CCATTAACCGTCAATTTGCTATCGAAGTTGCTGTATTAGACGGTAAAACGGGTCAAACAATTTACAACAACAACTACCGT GAAGTTGCGCTATGGAACTTCCCTAAAACCAGTGAAGTAGATACACAGAGCGCACGTTTTTGGACTTCAGCTTATGGCGA AATGGTGTTAAGAGTTAACCGTGACATCATGCTTGATCTCGAAAATCAATTTGCTTGTAAAATGACACTGCCACAGGTTG TAAATATCAATAATAACCGTATTACAATGGATCTTGGTCGTATTCACGGTGTTAAGAAAGGCGATAAATTAGATCTTTGG CATACAGGTTCTTTTATTGATCAAAATGGTCTACCACGTAATAAAGTGACTAAGACAAGTATAACGTTAACCGTAGATCG AGTGTATGAACAAAATGCGGATCTTGTTATTGATCAACCACAGTTAATTAATAGCATTCAAATTGGCGATGTTATGCATA AAAACATAGCTGAATAA
Upstream 100 bases:
>100_bases ACAAAACTTGCTATAGTTAAGGAAACGCAATTTGTAAGTACTTTTATCAATCAACAAATATTAGTTAGCAAATTCCATAC CCACTTGGCAGATAACAGTA
Downstream 100 bases:
>100_bases ACCAATTTTCAACCTTTAATCAATGAGGAACAGTGCCTAGCGTGTTGTTTCTCATTGTTTTATGACTCTTACCAACGTTT TGCCTCCTTAGTTATTGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MKKIIYLITSILTMSYIAPAHAEWFEVTGSASVLTSKDAARANALEDAAYQAMLFSGADISRLKDLKIFLENDNKRYQFS GSEIRSIEVVKEKKKNDKIYITARIDIYPSANSCHIGQYKKTFMTSEITIDSPQQAVMGKVYHLGEDLSTIFSRQLDKES QSFVSVGTSHIRIDKRQPEVAKMIAEDHGAQYIFSGSITDLSATIEQNLLKKDTINRQFAIEVAVLDGKTGQTIYNNNYR EVALWNFPKTSEVDTQSARFWTSAYGEMVLRVNRDIMLDLENQFACKMTLPQVVNINNNRITMDLGRIHGVKKGDKLDLW HTGSFIDQNGLPRNKVTKTSITLTVDRVYEQNADLVIDQPQLINSIQIGDVMHKNIAE
Sequences:
>Translated_378_residues MKKIIYLITSILTMSYIAPAHAEWFEVTGSASVLTSKDAARANALEDAAYQAMLFSGADISRLKDLKIFLENDNKRYQFS GSEIRSIEVVKEKKKNDKIYITARIDIYPSANSCHIGQYKKTFMTSEITIDSPQQAVMGKVYHLGEDLSTIFSRQLDKES QSFVSVGTSHIRIDKRQPEVAKMIAEDHGAQYIFSGSITDLSATIEQNLLKKDTINRQFAIEVAVLDGKTGQTIYNNNYR EVALWNFPKTSEVDTQSARFWTSAYGEMVLRVNRDIMLDLENQFACKMTLPQVVNINNNRITMDLGRIHGVKKGDKLDLW HTGSFIDQNGLPRNKVTKTSITLTVDRVYEQNADLVIDQPQLINSIQIGDVMHKNIAE >Mature_378_residues MKKIIYLITSILTMSYIAPAHAEWFEVTGSASVLTSKDAARANALEDAAYQAMLFSGADISRLKDLKIFLENDNKRYQFS GSEIRSIEVVKEKKKNDKIYITARIDIYPSANSCHIGQYKKTFMTSEITIDSPQQAVMGKVYHLGEDLSTIFSRQLDKES QSFVSVGTSHIRIDKRQPEVAKMIAEDHGAQYIFSGSITDLSATIEQNLLKKDTINRQFAIEVAVLDGKTGQTIYNNNYR EVALWNFPKTSEVDTQSARFWTSAYGEMVLRVNRDIMLDLENQFACKMTLPQVVNINNNRITMDLGRIHGVKKGDKLDLW HTGSFIDQNGLPRNKVTKTSITLTVDRVYEQNADLVIDQPQLINSIQIGDVMHKNIAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42734; Mature: 42734
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIIYLITSILTMSYIAPAHAEWFEVTGSASVLTSKDAARANALEDAAYQAMLFSGADI CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHEEEECCCCH SRLKDLKIFLENDNKRYQFSGSEIRSIEVVKEKKKNDKIYITARIDIYPSANSCHIGQYK HHHEEEEEEEECCCCEEEECCCCCEEEHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHH KTFMTSEITIDSPQQAVMGKVYHLGEDLSTIFSRQLDKESQSFVSVGTSHIRIDKRQPEV HHEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHCCCEEEEEECCCCHH AKMIAEDHGAQYIFSGSITDLSATIEQNLLKKDTINRQFAIEVAVLDGKTGQTIYNNNYR HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCE EVALWNFPKTSEVDTQSARFWTSAYGEMVLRVNRDIMLDLENQFACKMTLPQVVNINNNR EEEEECCCCCCCCCCCHHHHHHHHHHHEEEEECCEEEEEECCCEEEEEECCEEEECCCCE ITMDLGRIHGVKKGDKLDLWHTGSFIDQNGLPRNKVTKTSITLTVDRVYEQNADLVIDQP EEEEHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEHHCCCCCEEEECH QLINSIQIGDVMHKNIAE HHHCCEEHHHHHHHHCCC >Mature Secondary Structure MKKIIYLITSILTMSYIAPAHAEWFEVTGSASVLTSKDAARANALEDAAYQAMLFSGADI CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHEEEECCCCH SRLKDLKIFLENDNKRYQFSGSEIRSIEVVKEKKKNDKIYITARIDIYPSANSCHIGQYK HHHEEEEEEEECCCCEEEECCCCCEEEHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHH KTFMTSEITIDSPQQAVMGKVYHLGEDLSTIFSRQLDKESQSFVSVGTSHIRIDKRQPEV HHEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHCCCEEEEEECCCCHH AKMIAEDHGAQYIFSGSITDLSATIEQNLLKKDTINRQFAIEVAVLDGKTGQTIYNNNYR HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCE EVALWNFPKTSEVDTQSARFWTSAYGEMVLRVNRDIMLDLENQFACKMTLPQVVNINNNR EEEEECCCCCCCCCCCHHHHHHHHHHHEEEEECCEEEEEECCCEEEEEECCEEEECCCCE ITMDLGRIHGVKKGDKLDLWHTGSFIDQNGLPRNKVTKTSITLTVDRVYEQNADLVIDQP EEEEHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEHHCCCCCEEEECH QLINSIQIGDVMHKNIAE HHHCCEEHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA