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The map label for this gene is flaD [H]

Identifier: 59712470

GI number: 59712470

Start: 2094540

End: 2095667

Strand: Reverse

Name: flaD [H]

Synonym: VF_1863

Alternate gene names: 59712470

Gene position: 2095667-2094540 (Counterclockwise)

Preceding gene: 59712471

Following gene: 172087731

Centisome position: 72.33

GC content: 41.49

Gene sequence:

>1128_bases
ATGTCTATCAATGTAAACACAAACGTATCAGCAATGACAGCACAGCGTTACCTAAGCAACGCAACTAACGACCTAAACAG
CTCAATGGAGCGTTTGTCTTCAGGTCTTAAAATTAACAGTGCTAAAGATGATGCAGCGGGTCTACAAATTTCAAACCGCC
TAACGTCTCAAACTCGTGGTTTAGATGTTGCAGTTCGAAATGCAAATGATGGTATCTCAATGGCGCAAACTGCTGAAGGT
GCGATGAACGAAACAACGAACATCCTTCAACGTATGCGTGATTTATCACTTCAATCAGCTAACGGTTCAAATACACATGC
AGACCGTACAGCGATTCAAGAAGAAGTGGTTGCTTTGAATGACGAATTAAACCGTATTGCAGAAACAACATCGTTCGGTG
GCTCACGCCTACTTAACGGCCAGTTCGGTACTAAATCTTTCCAAATCGGTTCAGATTCAGGTGAAGCGGTAATGCTTACT
CTGAACAACATGCGCTCTGATACAACAGCGATGGGTGGTTCTACTTACTCAGCGACTGAAGGTAAAGATTCAAACTGGAA
AGTGGGTGCTGAAAATACAGAATTAACAATGAACTTTGTTGATAGCAAAGGTGAAGAACAAAACATCACTATCAATGCAA
AAGCTGGTGACGATATTGAAGAAGTAGCAACTTACATCAATGGTCAAAGCGATGCTGTAAACGCTTCTGTAACTGAAGAC
GGCAAATTACAAATTTTTGCAGCAGCAGATGCAACTGATATTGAATTCAGTGGTTCATTAAGCAACGAACTGGGTATGGG
TAATAAAGTATCTGACACAGTTAAGAGCATCGATGTAACAACCGTTGGTGGTTCACAAAAAGCGGTAGCAATTCTTGATT
CAGCAATGCAATACGTTGATTCAAACCGTGCTGATTTAGGTGCTTTCCAAAACCGTTTCAACCACGCTATTAACAACTTA
GAAAACATTAACGAGAACGTGAATGCGTCTAACAGCCAAATCAAAGATGTTGATTTTGCTAAAGAAACGACAGCAATGAC
GAAATCTCAAATCCTGCAACAAGCGAGCTCGTCTATCCTTGCTCAAGCTAAGCAGGCACCAAATGCAGCATTAGGCCTGT
TGGGCTAA

Upstream 100 bases:

>100_bases
GTAATTTGAAAGTAGGTCGCTAAGTTAAGTATCAACGATGAACAATACGGTTACCGGTCCAGGAGCGGAGTGATTCGGAA
CCAAAGTGGAGAAATAAATT

Downstream 100 bases:

>100_bases
TCAGCATAGTAAACACTTGTGAGAATGTGAGCTTATGCCATCTGCAAAGTTCAATCCCAACAGGTTATAAGTGAGTCTGA
CTTACTTTATAAAAATTAAA

Product: flagellin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSINVNTNVSAMTAQRYLSNATNDLNSSMERLSSGLKINSAKDDAAGLQISNRLTSQTRGLDVAVRNANDGISMAQTAEG
AMNETTNILQRMRDLSLQSANGSNTHADRTAIQEEVVALNDELNRIAETTSFGGSRLLNGQFGTKSFQIGSDSGEAVMLT
LNNMRSDTTAMGGSTYSATEGKDSNWKVGAENTELTMNFVDSKGEEQNITINAKAGDDIEEVATYINGQSDAVNASVTED
GKLQIFAAADATDIEFSGSLSNELGMGNKVSDTVKSIDVTTVGGSQKAVAILDSAMQYVDSNRADLGAFQNRFNHAINNL
ENINENVNASNSQIKDVDFAKETTAMTKSQILQQASSSILAQAKQAPNAALGLLG

Sequences:

>Translated_375_residues
MSINVNTNVSAMTAQRYLSNATNDLNSSMERLSSGLKINSAKDDAAGLQISNRLTSQTRGLDVAVRNANDGISMAQTAEG
AMNETTNILQRMRDLSLQSANGSNTHADRTAIQEEVVALNDELNRIAETTSFGGSRLLNGQFGTKSFQIGSDSGEAVMLT
LNNMRSDTTAMGGSTYSATEGKDSNWKVGAENTELTMNFVDSKGEEQNITINAKAGDDIEEVATYINGQSDAVNASVTED
GKLQIFAAADATDIEFSGSLSNELGMGNKVSDTVKSIDVTTVGGSQKAVAILDSAMQYVDSNRADLGAFQNRFNHAINNL
ENINENVNASNSQIKDVDFAKETTAMTKSQILQQASSSILAQAKQAPNAALGLLG
>Mature_374_residues
SINVNTNVSAMTAQRYLSNATNDLNSSMERLSSGLKINSAKDDAAGLQISNRLTSQTRGLDVAVRNANDGISMAQTAEGA
MNETTNILQRMRDLSLQSANGSNTHADRTAIQEEVVALNDELNRIAETTSFGGSRLLNGQFGTKSFQIGSDSGEAVMLTL
NNMRSDTTAMGGSTYSATEGKDSNWKVGAENTELTMNFVDSKGEEQNITINAKAGDDIEEVATYINGQSDAVNASVTEDG
KLQIFAAADATDIEFSGSLSNELGMGNKVSDTVKSIDVTTVGGSQKAVAILDSAMQYVDSNRADLGAFQNRFNHAINNLE
NINENVNASNSQIKDVDFAKETTAMTKSQILQQASSSILAQAKQAPNAALGLLG

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. FlaA is not essential for polar flagellar synthesis and swimming motility. Homopolymer of flaA is able to form a functional filament [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=169, Percent_Identity=43.1952662721894, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029
- InterPro:   IPR010810 [H]

Pfam domain/function: PF00700 Flagellin_C; PF07196 Flagellin_IN; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 39710; Mature: 39579

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINVNTNVSAMTAQRYLSNATNDLNSSMERLSSGLKINSAKDDAAGLQISNRLTSQTRG
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHCC
LDVAVRNANDGISMAQTAEGAMNETTNILQRMRDLSLQSANGSNTHADRTAIQEEVVALN
CEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
DELNRIAETTSFGGSRLLNGQFGTKSFQIGSDSGEAVMLTLNNMRSDTTAMGGSTYSATE
HHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCHHCCCCCEECCC
GKDSNWKVGAENTELTMNFVDSKGEEQNITINAKAGDDIEEVATYINGQSDAVNASVTED
CCCCCEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEECCC
GKLQIFAAADATDIEFSGSLSNELGMGNKVSDTVKSIDVTTVGGSQKAVAILDSAMQYVD
CCEEEEEECCCCCEEECCCCCHHCCCCCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHH
SNRADLGAFQNRFNHAINNLENINENVNASNSQIKDVDFAKETTAMTKSQILQQASSSIL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AQAKQAPNAALGLLG
HHHHHCCCCHHCCCC
>Mature Secondary Structure 
SINVNTNVSAMTAQRYLSNATNDLNSSMERLSSGLKINSAKDDAAGLQISNRLTSQTRG
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHCC
LDVAVRNANDGISMAQTAEGAMNETTNILQRMRDLSLQSANGSNTHADRTAIQEEVVALN
CEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
DELNRIAETTSFGGSRLLNGQFGTKSFQIGSDSGEAVMLTLNNMRSDTTAMGGSTYSATE
HHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCHHCCCCCEECCC
GKDSNWKVGAENTELTMNFVDSKGEEQNITINAKAGDDIEEVATYINGQSDAVNASVTED
CCCCCEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEECCC
GKLQIFAAADATDIEFSGSLSNELGMGNKVSDTVKSIDVTTVGGSQKAVAILDSAMQYVD
CCEEEEEECCCCCEEECCCCCHHCCCCCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHH
SNRADLGAFQNRFNHAINNLENINENVNASNSQIKDVDFAKETTAMTKSQILQQASSSIL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AQAKQAPNAALGLLG
HHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7883718; 12620739 [H]