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The map label for this gene is fliR [H]

Identifier: 59712447

GI number: 59712447

Start: 2073872

End: 2074654

Strand: Reverse

Name: fliR [H]

Synonym: VF_1840

Alternate gene names: 59712447

Gene position: 2074654-2073872 (Counterclockwise)

Preceding gene: 59712448

Following gene: 59712446

Centisome position: 71.6

GC content: 41.0

Gene sequence:

>783_bases
ATGGAATATCCAACTCAAATAGTTTTAGATTTTATAGCTACGTATTTCTGGCCTTATACCCGTATTTCAGCCATGTTAAT
GGTGATGTCGGTATTTGGGGCTCGTTTTGTGTCGCCTCGAATTCGACTCTATCTTGGTTTAAGCATTACCTTTGCTGTTA
TGCCCGCTATTCCAGCTATGCCTCCTGGAATTCAATTGGTCTCTTTCCAAGGTTTTATGACCACAGCAGAGCAGATCATT
ATTGGTGTAGCAATGGGGATGGTCACTGTATTTGTTACTCAAACCTTCGTACTTTTAGGGCAAATTTTGGGTATGCAATC
GAGTTTAGGTTTTGCATCCATGGTTGACCCTGCCAATGGTCAGAATACGCCACTACTTGGTCAATTATTCATGTTCTTAT
CGATTCTGTTTTTTCTAGGAACCGATGGGCATTTAAAAATGATTAACTTTGTGGTGATGAGTTTTACAACCTTACCCGTG
GGGGTTGGTAAGCTCACGAGTGTGGATTATCAATCCATGGCAAGTTGGCTTGGTATTATGATGAAGGCCGGGTTAAGTAT
GTCGTTATCAGGCATCATCGCCTTACTGACGGTTAACCTTTCTTTTGGTGTAATGACTCGTGCAGCACCGCAGTTAAATA
TCTTCTCATTAGGTTTTGCTTTTGCCTTACTCGTTGGTTTATTGCTGACGTCTTATATTATTTTGGGCTTGTTTAATCAC
TATGATCTGCATTGGCTTCGTGCTGAAGAGCAGATATGTAGCATGATCCGATTAGATTGTTGA

Upstream 100 bases:

>100_bases
ACGCGTATGTTGATGGAATACTTTTATGAACTTATTGCTCGAATGCCAACGGTACTCTATTGACGTGTGCACTCTGAATT
GATGCACATGAGCTAATGTT

Downstream 100 bases:

>100_bases
TTATGAAATTATTATTAATTAACACGACCGTGGAGGTCATTAGATATGGCTGAGAGTGACGGTCAAGAACGTACCGAAGA
CGCCACGTCCAAACGCTTGC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEYPTQIVLDFIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPGIQLVSFQGFMTTAEQII
IGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMFLSILFFLGTDGHLKMINFVVMSFTTLPV
GVGKLTSVDYQSMASWLGIMMKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNH
YDLHWLRAEEQICSMIRLDC

Sequences:

>Translated_260_residues
MEYPTQIVLDFIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPGIQLVSFQGFMTTAEQII
IGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMFLSILFFLGTDGHLKMINFVVMSFTTLPV
GVGKLTSVDYQSMASWLGIMMKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNH
YDLHWLRAEEQICSMIRLDC
>Mature_260_residues
MEYPTQIVLDFIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAMPPGIQLVSFQGFMTTAEQII
IGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMFLSILFFLGTDGHLKMINFVVMSFTTLPV
GVGKLTSVDYQSMASWLGIMMKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNH
YDLHWLRAEEQICSMIRLDC

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=219, Percent_Identity=36.5296803652968, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28568; Mature: 28568

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYPTQIVLDFIATYFWPYTRISAMLMVMSVFGARFVSPRIRLYLGLSITFAVMPAIPAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCC
PPGIQLVSFQGFMTTAEQIIIGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANG
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHCCCCCC
QNTPLLGQLFMFLSILFFLGTDGHLKMINFVVMSFTTLPVGVGKLTSVDYQSMASWLGIM
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHH
MKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIILGLFNH
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YDLHWLRAEEQICSMIRLDC
CCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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CCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]