| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is yeaH [C]
Identifier: 59712380
GI number: 59712380
Start: 1999771
End: 2001042
Strand: Direct
Name: yeaH [C]
Synonym: VF_1773
Alternate gene names: 59712380
Gene position: 1999771-2001042 (Clockwise)
Preceding gene: 172087726
Following gene: 59712381
Centisome position: 69.02
GC content: 39.86
Gene sequence:
>1272_bases ATGGCTCAATTTATTGACCGAAGGTTGAATGGTAAAAAGAAAAGTACCGTCAATAGACAGCGCTTTATTCGTCGCCATAA AGACCAAATAAAACGTGCGGTTTCTGATGCTGTAAATCAACGTTCAGTAACCAATACAGAAAGTGGTGAAAGTATCTCTA TTCCAAAGGGAGATATATCTGAGCCTGTTTTTCATCAAGGTCAAGGTGGTATTCGTGAACGTGTATTACCCGGCAATGAC CAATTTATTAAAGGTGATAAAATTGAACGCCCTCAAGGAGGAAATGGTGGCGGAGGTGCTGGTGATGGAGATGCCAGTGC GGATGGCGAAGGTCAAGACGACTTTATTTTTCAAATTTCGAAAGATGAATACCTTGATATTCTTTTTGAAGAGCTTGAAT TGCCTAACCTTGAGAAAAACCAAGTTCAAAAAATAACAGAATGGGAAACCCATCGAGCAGGTTATCAAACCGCCGGTGTC CCTTCTAATATTGATATCGTCCGTTCTCTACAGCAATCACTTGCTCGTAGAACTGCCATGACAGCGGGTAAAAAACGATT ACTCTCCGAATTAGAACAAGAATTAGAAACCATTAAAAACAGCGAACCAAGTCAACCGCTTGCAGTTCGTAAAATGCAGG AACAAATAGAAGAGCTTCGAGAAAGAATCAAACATGTTCCTTATATTGACTCATTTGATTTGCGTTATAAAAACTACGAG CGAACCCCTATCCCATCCAGTCAAGCGGTAATGTTTTGCTTAATGGATGTATCTGGGTCTATGGATCAAGCAACCAAAGA CATCGCAAAACGTTTTTATGTCCTGCTTTATCTCTTTTTAACTCGAACTTATGAAAACGTAGAAGTCGTTTTTATTCGCC ACCATACTCAGGCGAAAGAAGTAAATGAACACGATTTCTTTTACTCTCAAGAAACCGGTGGGACCATGGTTTCAAGCGCA TTGAAACTCATGAGAGACATCGTTGCTGAACGTTTTCCTGCAAATGAGTGGAATATTTATGCCGCACAAGCCTCTGATGG TGATAATTGGGCTGATGACTCACCAAAATGTAAAGAGCTGCTGACGTCATCCATTCTTCCAACTTGCCAATATTACTCAT ATATCGAAATCACAAAACGTCATCACCAAACATTGTGGACTGAGTACGACAAGTTGGCACAAGGCTTTGATAATTTTGCC ATGAAAAATATTCGTTCCGTTGAAGATATTTACCCAATATTCAGAGAATTATTTCAAAAGCAGCTGGCTTAA
Upstream 100 bases:
>100_bases ATTATGGGCTGATCTAATAACATTTTAGCTAATTTGTTGTCTATATAAGTAAGTTCCTTTAGACAATCGCTAAGGTGATA TGAATCAGGAGGGCAATATT
Downstream 100 bases:
>100_bases GGAGGCAATGATGAAAAGGACGACAAAGCTACCTGATGGGCCAGATTGGACCTTTCAAATGCTTGAAGAATATCATGTAG AAATTAAGCGTGTTGCCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MAQFIDRRLNGKKKSTVNRQRFIRRHKDQIKRAVSDAVNQRSVTNTESGESISIPKGDISEPVFHQGQGGIRERVLPGND QFIKGDKIERPQGGNGGGGAGDGDASADGEGQDDFIFQISKDEYLDILFEELELPNLEKNQVQKITEWETHRAGYQTAGV PSNIDIVRSLQQSLARRTAMTAGKKRLLSELEQELETIKNSEPSQPLAVRKMQEQIEELRERIKHVPYIDSFDLRYKNYE RTPIPSSQAVMFCLMDVSGSMDQATKDIAKRFYVLLYLFLTRTYENVEVVFIRHHTQAKEVNEHDFFYSQETGGTMVSSA LKLMRDIVAERFPANEWNIYAAQASDGDNWADDSPKCKELLTSSILPTCQYYSYIEITKRHHQTLWTEYDKLAQGFDNFA MKNIRSVEDIYPIFRELFQKQLA
Sequences:
>Translated_423_residues MAQFIDRRLNGKKKSTVNRQRFIRRHKDQIKRAVSDAVNQRSVTNTESGESISIPKGDISEPVFHQGQGGIRERVLPGND QFIKGDKIERPQGGNGGGGAGDGDASADGEGQDDFIFQISKDEYLDILFEELELPNLEKNQVQKITEWETHRAGYQTAGV PSNIDIVRSLQQSLARRTAMTAGKKRLLSELEQELETIKNSEPSQPLAVRKMQEQIEELRERIKHVPYIDSFDLRYKNYE RTPIPSSQAVMFCLMDVSGSMDQATKDIAKRFYVLLYLFLTRTYENVEVVFIRHHTQAKEVNEHDFFYSQETGGTMVSSA LKLMRDIVAERFPANEWNIYAAQASDGDNWADDSPKCKELLTSSILPTCQYYSYIEITKRHHQTLWTEYDKLAQGFDNFA MKNIRSVEDIYPIFRELFQKQLA >Mature_422_residues AQFIDRRLNGKKKSTVNRQRFIRRHKDQIKRAVSDAVNQRSVTNTESGESISIPKGDISEPVFHQGQGGIRERVLPGNDQ FIKGDKIERPQGGNGGGGAGDGDASADGEGQDDFIFQISKDEYLDILFEELELPNLEKNQVQKITEWETHRAGYQTAGVP SNIDIVRSLQQSLARRTAMTAGKKRLLSELEQELETIKNSEPSQPLAVRKMQEQIEELRERIKHVPYIDSFDLRYKNYER TPIPSSQAVMFCLMDVSGSMDQATKDIAKRFYVLLYLFLTRTYENVEVVFIRHHTQAKEVNEHDFFYSQETGGTMVSSAL KLMRDIVAERFPANEWNIYAAQASDGDNWADDSPKCKELLTSSILPTCQYYSYIEITKRHHQTLWTEYDKLAQGFDNFAM KNIRSVEDIYPIFRELFQKQLA
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=423, Percent_Identity=69.7399527186761, Blast_Score=617, Evalue=1e-178,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 48541; Mature: 48410
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQFIDRRLNGKKKSTVNRQRFIRRHKDQIKRAVSDAVNQRSVTNTESGESISIPKGDIS CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC EPVFHQGQGGIRERVLPGNDQFIKGDKIERPQGGNGGGGAGDGDASADGEGQDDFIFQIS CCHHHCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC KDEYLDILFEELELPNLEKNQVQKITEWETHRAGYQTAGVPSNIDIVRSLQQSLARRTAM CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH TAGKKRLLSELEQELETIKNSEPSQPLAVRKMQEQIEELRERIKHVPYIDSFDLRYKNYE HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC RTPIPSSQAVMFCLMDVSGSMDQATKDIAKRFYVLLYLFLTRTYENVEVVFIRHHTQAKE CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH VNEHDFFYSQETGGTMVSSALKLMRDIVAERFPANEWNIYAAQASDGDNWADDSPKCKEL CCHHHCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHH LTSSILPTCQYYSYIEITKRHHQTLWTEYDKLAQGFDNFAMKNIRSVEDIYPIFRELFQK HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLA HCC >Mature Secondary Structure AQFIDRRLNGKKKSTVNRQRFIRRHKDQIKRAVSDAVNQRSVTNTESGESISIPKGDIS CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC EPVFHQGQGGIRERVLPGNDQFIKGDKIERPQGGNGGGGAGDGDASADGEGQDDFIFQIS CCHHHCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC KDEYLDILFEELELPNLEKNQVQKITEWETHRAGYQTAGVPSNIDIVRSLQQSLARRTAM CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH TAGKKRLLSELEQELETIKNSEPSQPLAVRKMQEQIEELRERIKHVPYIDSFDLRYKNYE HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC RTPIPSSQAVMFCLMDVSGSMDQATKDIAKRFYVLLYLFLTRTYENVEVVFIRHHTQAKE CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH VNEHDFFYSQETGGTMVSSALKLMRDIVAERFPANEWNIYAAQASDGDNWADDSPKCKEL CCHHHCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHH LTSSILPTCQYYSYIEITKRHHQTLWTEYDKLAQGFDNFAMKNIRSVEDIYPIFRELFQK HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QLA HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]