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The map label for this gene is yciM [H]

Identifier: 59712363

GI number: 59712363

Start: 1982962

End: 1984131

Strand: Reverse

Name: yciM [H]

Synonym: VF_1756

Alternate gene names: 59712363

Gene position: 1984131-1982962 (Counterclockwise)

Preceding gene: 59712364

Following gene: 59712362

Centisome position: 68.48

GC content: 40.43

Gene sequence:

>1170_bases
ATGTTAGAACTGCTATTCCTATTATTACCTATTGCTGCCGGTTATGGCTGGTATATGGGTAATAGGAGTGCGAGTCAACA
ACGCCAAAAAGAAACAAATCACCTGTCACGTCAATACGTGGCGGGTTTGAATCTATTGCTGTCTGATCAATCAGATAAAG
CAGTCGATCATTTCATAGAATTACTTCAAGTAGATAGCGATACCATAGACACCCACCTTGCATTAGGTAACCTTTTTAGA
CGAAGAGGTGAAGTCGATCGCGCCATCAAAATTCATCAAAACCTCATCGCACGTCCGAACCTTACGATAGACCAACGAAA
TATAGCCTTACAGCAGTTAGCAAAAGATTATATGGTCTCAGGTATTCTTGATCGTGCTGAAAAAATATTTGAGCAGCTGC
TTGAAGAGCCTGATCACAGAGAAGCCGCTTTACTGCAATTAGTTGCTATTCATCAACAGACTCGAGAGTGGGAGCAAGCG
ATTCAATTTGCGAATAGTTTGGTTCGTATGGGGCGTAAAAAACTCAAGCTTGATATTGCTCACTATTACTGTGAACTCGC
GATGCAAGAGCTTGCAGATGAGAATTTGAATAAAGCAAAACAGAATCTTAAAAAAGCCTTATCTTCTGATAATCAATGTG
TACGAGCCTCTATTATGATGGCGAAACTTCTTATGGAGGAAGAGAATTATAAAAGTGCTCTTGCTCACCTTGAGTCAGTA
CTGGATCAAGACATTGATTTTGTCAGTGAAGCATTACCATTGCTTGCTGAATGTTATGAAAAACTAGACAGAGAAGGCGC
ATTACTTCAATTTTTAAAAGAAGCGATTTCAAAAGGAGCAGGTGCTAGTGCTGAATTGATGCTTTCAAATTTGATTGCCA
AGCACGAAGGTGTCGCTTTAGCTCAAGGGTATATGACTAAACAGCTTCTTAAGAATCCGACAATGAAAGGCTTCTATCGT
CTCATGGGCTACCATACCGATGAAGCTGAAGATGGTAGGGCGAAAGCAAGTTTAACTAGTTTGCAAACCCTAGTAGGCGA
GCAATTGAAAATGAAACCTAATTACCGCTGCAGTAAGTGTGGTTTCTCTGCTCATCGATTGTTTTGGCAATGTCCATCTT
GTAAAGGATGGGGAGTGATTAAGCCTATTAGAGGTTTAGATGGTGAATAA

Upstream 100 bases:

>100_bases
AAAGCGAGCATGACTCAACGCCGCCTTCGCAAACGCTTAGATAAAAAAACGGCTGAGCTTGATAAGTTGCGAATTGAGTC
AACGAAAGGGTAGTGACTGA

Downstream 100 bases:

>100_bases
TTGAAGAGGCGCTCTGAGTGCCTCTTTTTTTGAATGTAAGAAAAGACCGTGAGTACGACTAATCCTCATGATGAATTGAT
GGGATTGGTATAAATTTTTA

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPIAAGYGWYMGNRSASQQRQKETNHLSRQYVAGLNLLLSDQSDKAVDHFIELLQVDSDTIDTHLALGNLFR
RRGEVDRAIKIHQNLIARPNLTIDQRNIALQQLAKDYMVSGILDRAEKIFEQLLEEPDHREAALLQLVAIHQQTREWEQA
IQFANSLVRMGRKKLKLDIAHYYCELAMQELADENLNKAKQNLKKALSSDNQCVRASIMMAKLLMEEENYKSALAHLESV
LDQDIDFVSEALPLLAECYEKLDREGALLQFLKEAISKGAGASAELMLSNLIAKHEGVALAQGYMTKQLLKNPTMKGFYR
LMGYHTDEAEDGRAKASLTSLQTLVGEQLKMKPNYRCSKCGFSAHRLFWQCPSCKGWGVIKPIRGLDGE

Sequences:

>Translated_389_residues
MLELLFLLLPIAAGYGWYMGNRSASQQRQKETNHLSRQYVAGLNLLLSDQSDKAVDHFIELLQVDSDTIDTHLALGNLFR
RRGEVDRAIKIHQNLIARPNLTIDQRNIALQQLAKDYMVSGILDRAEKIFEQLLEEPDHREAALLQLVAIHQQTREWEQA
IQFANSLVRMGRKKLKLDIAHYYCELAMQELADENLNKAKQNLKKALSSDNQCVRASIMMAKLLMEEENYKSALAHLESV
LDQDIDFVSEALPLLAECYEKLDREGALLQFLKEAISKGAGASAELMLSNLIAKHEGVALAQGYMTKQLLKNPTMKGFYR
LMGYHTDEAEDGRAKASLTSLQTLVGEQLKMKPNYRCSKCGFSAHRLFWQCPSCKGWGVIKPIRGLDGE
>Mature_389_residues
MLELLFLLLPIAAGYGWYMGNRSASQQRQKETNHLSRQYVAGLNLLLSDQSDKAVDHFIELLQVDSDTIDTHLALGNLFR
RRGEVDRAIKIHQNLIARPNLTIDQRNIALQQLAKDYMVSGILDRAEKIFEQLLEEPDHREAALLQLVAIHQQTREWEQA
IQFANSLVRMGRKKLKLDIAHYYCELAMQELADENLNKAKQNLKKALSSDNQCVRASIMMAKLLMEEENYKSALAHLESV
LDQDIDFVSEALPLLAECYEKLDREGALLQFLKEAISKGAGASAELMLSNLIAKHEGVALAQGYMTKQLLKNPTMKGFYR
LMGYHTDEAEDGRAKASLTSLQTLVGEQLKMKPNYRCSKCGFSAHRLFWQCPSCKGWGVIKPIRGLDGE

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=51.7150395778364, Blast_Score=433, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44034; Mature: 44034

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLFLLLPIAAGYGWYMGNRSASQQRQKETNHLSRQYVAGLNLLLSDQSDKAVDHFIE
CHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQVDSDTIDTHLALGNLFRRRGEVDRAIKIHQNLIARPNLTIDQRNIALQQLAKDYMVS
HHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
GILDRAEKIFEQLLEEPDHREAALLQLVAIHQQTREWEQAIQFANSLVRMGRKKLKLDIA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYYCELAMQELADENLNKAKQNLKKALSSDNQCVRASIMMAKLLMEEENYKSALAHLESV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDQDIDFVSEALPLLAECYEKLDREGALLQFLKEAISKGAGASAELMLSNLIAKHEGVAL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHH
AQGYMTKQLLKNPTMKGFYRLMGYHTDEAEDGRAKASLTSLQTLVGEQLKMKPNYRCSKC
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
GFSAHRLFWQCPSCKGWGVIKPIRGLDGE
CCHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPIAAGYGWYMGNRSASQQRQKETNHLSRQYVAGLNLLLSDQSDKAVDHFIE
CHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LLQVDSDTIDTHLALGNLFRRRGEVDRAIKIHQNLIARPNLTIDQRNIALQQLAKDYMVS
HHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
GILDRAEKIFEQLLEEPDHREAALLQLVAIHQQTREWEQAIQFANSLVRMGRKKLKLDIA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYYCELAMQELADENLNKAKQNLKKALSSDNQCVRASIMMAKLLMEEENYKSALAHLESV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDQDIDFVSEALPLLAECYEKLDREGALLQFLKEAISKGAGASAELMLSNLIAKHEGVAL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHH
AQGYMTKQLLKNPTMKGFYRLMGYHTDEAEDGRAKASLTSLQTLVGEQLKMKPNYRCSKC
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
GFSAHRLFWQCPSCKGWGVIKPIRGLDGE
CCHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]