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The map label for this gene is ybaF [H]

Identifier: 59712171

GI number: 59712171

Start: 1749850

End: 1750692

Strand: Reverse

Name: ybaF [H]

Synonym: VF_1564

Alternate gene names: 59712171

Gene position: 1750692-1749850 (Counterclockwise)

Preceding gene: 59712172

Following gene: 59712169

Centisome position: 60.42

GC content: 31.44

Gene sequence:

>843_bases
ATGTCCACTAAGAAGCAAAGCTTTGGAATTAACTATGTAGATATTGATACATGGTTACATCGTTTAAATGGCGTAACTAA
GTTTCTTCTTTTTATCTCTTGGATAACAGTAGTACTAACAACGTTTGATTTACGAATTATTATTCCATTAATTTTATTTG
GTTTATTTTTATTAAAAGAAACAAAAGTACCATATATAGCTTATAAACCGTTACTTATTGGTACATTATCGGTTTTAAGT
ATGAATGCTGTTTTTATGTTCTTACTTGCACCAAATCAAGGGAATGAATTGATAGGTACAACGACAGAATTGTTTCCTAT
TTTTGGTCATTATGTAGTTACACAAGAAACGCTTTTTTATTTGATAACGGTAACACTAAAATATTTTAGTATGTTTCCAA
TCGCATTAGTGTTTGTTTTTACAACGCACCCAACAGAGTTTGCAGCAAGTCTAAATCGAATTGGGTTACCTTATAAGATT
GCATATGCAGTGAGTTTAACACTTCGTTATTTACCTGAAGTGAAAAGCGATTTTGTTAATATCATGCATGCTCAGCAAGC
TCGAGGTGTCGATTTATCAAAAAATGTTCCTGTATTTACACGAATTAGTAATTTGGCGAAAATCTTAGGTCCATTGATTT
TCTCAAGCTTAGACCGTGCTGATGAAATATCGAATGCAATGGTATTACGAGGTTTTGGTCGTGGGAAAAGCAGAACTTGG
TTTAGCGAAAAAAGCATAACTAAAACAGATAAATTAATAATGCTGAGCCTATTTTTGGTTGTTTCTTTAGCTATTACTAA
AAAAATAATGGATACATCAATGTTTTGGTATCCTTTATCTTAA

Upstream 100 bases:

>100_bases
ACAGTAACAAGCTTATTTGAGTTAGCTCAGAAAGCGGATGTTGAAAATATTAATGGTTTTATAACGCAGTTTATTACTGA
AGAGTGTGAGAGTACGAAAA

Downstream 100 bases:

>100_bases
TATTATTAATTAAGATAAAAAATAGGCGTGTTATACGCCTATTTTTTTATTTTCTAATTGACTAAAATGTTCGATAACAT
CACAACTGATATTTTCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSTKKQSFGINYVDIDTWLHRLNGVTKFLLFISWITVVLTTFDLRIIIPLILFGLFLLKETKVPYIAYKPLLIGTLSVLS
MNAVFMFLLAPNQGNELIGTTTELFPIFGHYVVTQETLFYLITVTLKYFSMFPIALVFVFTTHPTEFAASLNRIGLPYKI
AYAVSLTLRYLPEVKSDFVNIMHAQQARGVDLSKNVPVFTRISNLAKILGPLIFSSLDRADEISNAMVLRGFGRGKSRTW
FSEKSITKTDKLIMLSLFLVVSLAITKKIMDTSMFWYPLS

Sequences:

>Translated_280_residues
MSTKKQSFGINYVDIDTWLHRLNGVTKFLLFISWITVVLTTFDLRIIIPLILFGLFLLKETKVPYIAYKPLLIGTLSVLS
MNAVFMFLLAPNQGNELIGTTTELFPIFGHYVVTQETLFYLITVTLKYFSMFPIALVFVFTTHPTEFAASLNRIGLPYKI
AYAVSLTLRYLPEVKSDFVNIMHAQQARGVDLSKNVPVFTRISNLAKILGPLIFSSLDRADEISNAMVLRGFGRGKSRTW
FSEKSITKTDKLIMLSLFLVVSLAITKKIMDTSMFWYPLS
>Mature_279_residues
STKKQSFGINYVDIDTWLHRLNGVTKFLLFISWITVVLTTFDLRIIIPLILFGLFLLKETKVPYIAYKPLLIGTLSVLSM
NAVFMFLLAPNQGNELIGTTTELFPIFGHYVVTQETLFYLITVTLKYFSMFPIALVFVFTTHPTEFAASLNRIGLPYKIA
YAVSLTLRYLPEVKSDFVNIMHAQQARGVDLSKNVPVFTRISNLAKILGPLIFSSLDRADEISNAMVLRGFGRGKSRTWF
SEKSITKTDKLIMLSLFLVVSLAITKKIMDTSMFWYPLS

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 31796; Mature: 31665

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKKQSFGINYVDIDTWLHRLNGVTKFLLFISWITVVLTTFDLRIIIPLILFGLFLLKE
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKVPYIAYKPLLIGTLSVLSMNAVFMFLLAPNQGNELIGTTTELFPIFGHYVVTQETLFY
CCCCEEEECHHHHHHHHHHHHHHHEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
LITVTLKYFSMFPIALVFVFTTHPTEFAASLNRIGLPYKIAYAVSLTLRYLPEVKSDFVN
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
IMHAQQARGVDLSKNVPVFTRISNLAKILGPLIFSSLDRADEISNAMVLRGFGRGKSRTW
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCE
FSEKSITKTDKLIMLSLFLVVSLAITKKIMDTSMFWYPLS
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
STKKQSFGINYVDIDTWLHRLNGVTKFLLFISWITVVLTTFDLRIIIPLILFGLFLLKE
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKVPYIAYKPLLIGTLSVLSMNAVFMFLLAPNQGNELIGTTTELFPIFGHYVVTQETLFY
CCCCEEEECHHHHHHHHHHHHHHHEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
LITVTLKYFSMFPIALVFVFTTHPTEFAASLNRIGLPYKIAYAVSLTLRYLPEVKSDFVN
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
IMHAQQARGVDLSKNVPVFTRISNLAKILGPLIFSSLDRADEISNAMVLRGFGRGKSRTW
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCE
FSEKSITKTDKLIMLSLFLVVSLAITKKIMDTSMFWYPLS
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]