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The map label for this gene is ydcP [H]

Identifier: 59711990

GI number: 59711990

Start: 1530369

End: 1532612

Strand: Reverse

Name: ydcP [H]

Synonym: VF_1383

Alternate gene names: 59711990

Gene position: 1532612-1530369 (Counterclockwise)

Preceding gene: 59711992

Following gene: 59711989

Centisome position: 52.89

GC content: 36.81

Gene sequence:

>2244_bases
ATGAGCAGAAAACTTGAATTATTGGCACCCGGCGGTGATGTAGAAGCGATAAAGGCGGCCATCGTAGCAGGGGCAAATGC
CGTTTATTGTGGCTTAGATGTATTTAACGCCCGTAACCGTGCATCCAATCTCTCATTTGATGAATTGACTGGTATTTTAC
GCCTTGCTCATGAGCATGGCTGTGAAGTATTCCTTACTTTGAATATTGTTCTTCTTGAACATGAAATTAAAAGCATTGCT
AAATTACTTAATCAACTAGTGAATACATCAGTTGACGGCATTATTGTGCAAGATTTAGCGATGTTTGATTTAGTGAAAAA
ATACTTCCCAACACTCGATGTTCACGCTTCAACGCAATTAACTACGCATAATGAAGGACAAATTAAGTTCTTAGCTAAGT
TAGGGGCTTCTCGTGTTAATTTATCTCGTGAACTAAATATTGAAGAAGTGAAATCACTGACTGCTGTTGCTCATGAGCAC
GATGTGCTAACCGAAGTGTTTGTTCATGGTTCACTATGTATTGCATTTTCTGGTCAATGTTATTCAACATCAGTAAGTGC
GGGTAACTCAGGTAACCGTGGCCGTTGTAGCCAAGCATGTCGTGATGAATACGAAGAAACCGCGGTTGGTAACAAATACC
CTCTAAACTTAAAAGACAACTCAGCGTATTTTGATTTGCCAGATCTGGTTGATGCTAAAGTTGATTCTTTAAAAGTAGAA
GGGCGTATTAAAGGCTCTCATTACGTTTATACGGTTATTGATAATTGGCGCAAAAACATCAATAAATTCATCGAGTCTGG
CGATTTATTAGAAGATGATTCAAACCTTCACAAAGTGTTTAACCGTGATTTTACCAATTCATTTTTGACTGGTAACTTAA
CCAAAGACATGTTCATCGATAACCCTAGAGATCACAGTGTTACTCATGCGGTAGAGAAAAGTAATGCCATTGATGTGGTT
CAAATTCATGATGTTAAAGCTGAATTGAACGCAGCAAAAGACAATCTTGGTGAAGAGCTACGTGAGAAAATTCAAGATCT
GGATATTTCAAAACTGCCATTATCCATTGCATTTAAAGCACAGCTTGATAGTCCATTAAAAGTGGTGGTAGCAACTTCAA
AAGAGATCTTTGAATTAGAATCGACATCGTTACTTATGGCTGCTGGTGAGAAGTCAATTACACAAAAAGAGCTAGAGAAA
CGCTTTAAAGGGGTTTCTAATAGCGATTATGAGTTCTCTGGCTATGATTTTTCTCAAGTTGATGAAGGTTTAATCCTGCC
TTTTAAAGAACTTTCAGATCTAAAAGATCAGATTGCGTATCGTTTAAATGGAAATAAAGCCGTTATTAAACATGTTGAAT
TACCAAAATTAGCTCAGAAGCCGAAAGTTGAACAGCAACCTAAGCTATCTATGCTTATCGCAGATATTGCCGACTTAAAA
ATATGTGATGCTACTGATGCAGATATTTACTTTAAGTTACCAGAAAGTTTTAGACGCAATGATAAAACGTACATCAACAT
CTTCTCAGAAAATCCAAGATTGATCCCATGGTTCCCTGCGGTATTGATTGGTAAAGATTATAATGAAGCTGTGAAATTCC
TTGAAGAAGTGAAACCTGCACGTATTGTTACTAATAATACAGGTATTGCTTATAAAGCTTATGAAATGGGAATTGAGTGG
GTTGCGGGTCCATTCATGAATACCACCAACTCACACGCATTAATTACACTAAAAGAAGAGTTTAATTGTGCTGGTGCGTT
CATTTCTAATGAAATAAATCAAGGACAAATGAAACACATTCGTCGTCCTGAAAACTTTAAGTTACTTTACAGCATTTATC
ATCCAATTTTGTTGATGACAAGTCGTCAATGCTTCTTCCAACAAACGGTTGGTTGTAATAAGCGTGCGATTGAAGCGGGT
TGTATGATTAAGTGTGAAAAAGCGACAACTATTACGAACATGAAAGGGGTCTCTTTTGCTGTAGATAAGCAAAAAGGTGG
CTACCCAAGTATTTATAACCATGAGCAGTTTTTAAACATGGATGTCGTTAATGATTTATCTGATTTGTTTGATGAATTCT
TTATTGATTTAACTAATATTGGTGGTGGTTCTAAAGAACAAGCGGATATTGTTAAGTTAGCAACGCACTTTGAGGCTCTG
GTTAAAGGTGAAACTGCGGTTCAAGAAGCGTTATATTCAATGGTACCTATTAATACACATAATCAGTATGTGAAAGGTCT
TTAA

Upstream 100 bases:

>100_bases
CTGGATCAATAAAAACCCTTACTTCTGGTAATAAAAGTGTGAGGCGAGTAGAATACTCCCTCAAAAATTATTACAGCAAA
ACGAAGTGAGCAATTTCAGA

Downstream 100 bases:

>100_bases
TCAATTTTTCGCTTTGATTTAAATAGTCAGCCACGATCACATATCGTGGCTTTTTTTTGTCTATAATCAATTTATAGCAA
CATAATATTAACGTAAATTC

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 747; Mature: 746

Protein sequence:

>747_residues
MSRKLELLAPGGDVEAIKAAIVAGANAVYCGLDVFNARNRASNLSFDELTGILRLAHEHGCEVFLTLNIVLLEHEIKSIA
KLLNQLVNTSVDGIIVQDLAMFDLVKKYFPTLDVHASTQLTTHNEGQIKFLAKLGASRVNLSRELNIEEVKSLTAVAHEH
DVLTEVFVHGSLCIAFSGQCYSTSVSAGNSGNRGRCSQACRDEYEETAVGNKYPLNLKDNSAYFDLPDLVDAKVDSLKVE
GRIKGSHYVYTVIDNWRKNINKFIESGDLLEDDSNLHKVFNRDFTNSFLTGNLTKDMFIDNPRDHSVTHAVEKSNAIDVV
QIHDVKAELNAAKDNLGEELREKIQDLDISKLPLSIAFKAQLDSPLKVVVATSKEIFELESTSLLMAAGEKSITQKELEK
RFKGVSNSDYEFSGYDFSQVDEGLILPFKELSDLKDQIAYRLNGNKAVIKHVELPKLAQKPKVEQQPKLSMLIADIADLK
ICDATDADIYFKLPESFRRNDKTYINIFSENPRLIPWFPAVLIGKDYNEAVKFLEEVKPARIVTNNTGIAYKAYEMGIEW
VAGPFMNTTNSHALITLKEEFNCAGAFISNEINQGQMKHIRRPENFKLLYSIYHPILLMTSRQCFFQQTVGCNKRAIEAG
CMIKCEKATTITNMKGVSFAVDKQKGGYPSIYNHEQFLNMDVVNDLSDLFDEFFIDLTNIGGGSKEQADIVKLATHFEAL
VKGETAVQEALYSMVPINTHNQYVKGL

Sequences:

>Translated_747_residues
MSRKLELLAPGGDVEAIKAAIVAGANAVYCGLDVFNARNRASNLSFDELTGILRLAHEHGCEVFLTLNIVLLEHEIKSIA
KLLNQLVNTSVDGIIVQDLAMFDLVKKYFPTLDVHASTQLTTHNEGQIKFLAKLGASRVNLSRELNIEEVKSLTAVAHEH
DVLTEVFVHGSLCIAFSGQCYSTSVSAGNSGNRGRCSQACRDEYEETAVGNKYPLNLKDNSAYFDLPDLVDAKVDSLKVE
GRIKGSHYVYTVIDNWRKNINKFIESGDLLEDDSNLHKVFNRDFTNSFLTGNLTKDMFIDNPRDHSVTHAVEKSNAIDVV
QIHDVKAELNAAKDNLGEELREKIQDLDISKLPLSIAFKAQLDSPLKVVVATSKEIFELESTSLLMAAGEKSITQKELEK
RFKGVSNSDYEFSGYDFSQVDEGLILPFKELSDLKDQIAYRLNGNKAVIKHVELPKLAQKPKVEQQPKLSMLIADIADLK
ICDATDADIYFKLPESFRRNDKTYINIFSENPRLIPWFPAVLIGKDYNEAVKFLEEVKPARIVTNNTGIAYKAYEMGIEW
VAGPFMNTTNSHALITLKEEFNCAGAFISNEINQGQMKHIRRPENFKLLYSIYHPILLMTSRQCFFQQTVGCNKRAIEAG
CMIKCEKATTITNMKGVSFAVDKQKGGYPSIYNHEQFLNMDVVNDLSDLFDEFFIDLTNIGGGSKEQADIVKLATHFEAL
VKGETAVQEALYSMVPINTHNQYVKGL
>Mature_746_residues
SRKLELLAPGGDVEAIKAAIVAGANAVYCGLDVFNARNRASNLSFDELTGILRLAHEHGCEVFLTLNIVLLEHEIKSIAK
LLNQLVNTSVDGIIVQDLAMFDLVKKYFPTLDVHASTQLTTHNEGQIKFLAKLGASRVNLSRELNIEEVKSLTAVAHEHD
VLTEVFVHGSLCIAFSGQCYSTSVSAGNSGNRGRCSQACRDEYEETAVGNKYPLNLKDNSAYFDLPDLVDAKVDSLKVEG
RIKGSHYVYTVIDNWRKNINKFIESGDLLEDDSNLHKVFNRDFTNSFLTGNLTKDMFIDNPRDHSVTHAVEKSNAIDVVQ
IHDVKAELNAAKDNLGEELREKIQDLDISKLPLSIAFKAQLDSPLKVVVATSKEIFELESTSLLMAAGEKSITQKELEKR
FKGVSNSDYEFSGYDFSQVDEGLILPFKELSDLKDQIAYRLNGNKAVIKHVELPKLAQKPKVEQQPKLSMLIADIADLKI
CDATDADIYFKLPESFRRNDKTYINIFSENPRLIPWFPAVLIGKDYNEAVKFLEEVKPARIVTNNTGIAYKAYEMGIEWV
AGPFMNTTNSHALITLKEEFNCAGAFISNEINQGQMKHIRRPENFKLLYSIYHPILLMTSRQCFFQQTVGCNKRAIEAGC
MIKCEKATTITNMKGVSFAVDKQKGGYPSIYNHEQFLNMDVVNDLSDLFDEFFIDLTNIGGGSKEQADIVKLATHFEALV
KGETAVQEALYSMVPINTHNQYVKGL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=318, Percent_Identity=35.8490566037736, Blast_Score=200, Evalue=3e-52,
Organism=Escherichia coli, GI1789548, Length=297, Percent_Identity=31.3131313131313, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1788397, Length=342, Percent_Identity=28.0701754385965, Blast_Score=121, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 83502; Mature: 83371

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKLELLAPGGDVEAIKAAIVAGANAVYCGLDVFNARNRASNLSFDELTGILRLAHEHG
CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHCC
CEVFLTLNIVLLEHEIKSIAKLLNQLVNTSVDGIIVQDLAMFDLVKKYFPTLDVHASTQL
CEEEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEE
TTHNEGQIKFLAKLGASRVNLSRELNIEEVKSLTAVAHEHDVLTEVFVHGSLCIAFSGQC
EECCCCCEEEHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCE
YSTSVSAGNSGNRGRCSQACRDEYEETAVGNKYPLNLKDNSAYFDLPDLVDAKVDSLKVE
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCHHHHHCCCCCEEEE
GRIKGSHYVYTVIDNWRKNINKFIESGDLLEDDSNLHKVFNRDFTNSFLTGNLTKDMFID
EEECCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEECCCCHHHCCC
NPRDHSVTHAVEKSNAIDVVQIHDVKAELNAAKDNLGEELREKIQDLDISKLPLSIAFKA
CCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
QLDSPLKVVVATSKEIFELESTSLLMAAGEKSITQKELEKRFKGVSNSDYEFSGYDFSQV
CCCCCEEEEEECCHHHEEECCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHC
DEGLILPFKELSDLKDQIAYRLNGNKAVIKHVELPKLAQKPKVEQQPKLSMLIADIADLK
CCCCEECHHHHHHHHHHHEEEECCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHCCE
ICDATDADIYFKLPESFRRNDKTYINIFSENPRLIPWFPAVLIGKDYNEAVKFLEEVKPA
EECCCCCCEEEECCHHHCCCCCEEEEEECCCCCEEEECCCEEECCCHHHHHHHHHHCCCC
RIVTNNTGIAYKAYEMGIEWVAGPFMNTTNSHALITLKEEFNCAGAFISNEINQGQMKHI
EEEECCCCCEEEHHHCCCHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHC
RRPENFKLLYSIYHPILLMTSRQCFFQQTVGCNKRAIEAGCMIKCEKATTITNMKGVSFA
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEECCCCEEEECCCCEEECCCCCEEE
VDKQKGGYPSIYNHEQFLNMDVVNDLSDLFDEFFIDLTNIGGGSKEQADIVKLATHFEAL
EECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
VKGETAVQEALYSMVPINTHNQYVKGL
HCCHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure 
SRKLELLAPGGDVEAIKAAIVAGANAVYCGLDVFNARNRASNLSFDELTGILRLAHEHG
CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHCC
CEVFLTLNIVLLEHEIKSIAKLLNQLVNTSVDGIIVQDLAMFDLVKKYFPTLDVHASTQL
CEEEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCEEE
TTHNEGQIKFLAKLGASRVNLSRELNIEEVKSLTAVAHEHDVLTEVFVHGSLCIAFSGQC
EECCCCCEEEHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCE
YSTSVSAGNSGNRGRCSQACRDEYEETAVGNKYPLNLKDNSAYFDLPDLVDAKVDSLKVE
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCHHHHHCCCCCEEEE
GRIKGSHYVYTVIDNWRKNINKFIESGDLLEDDSNLHKVFNRDFTNSFLTGNLTKDMFID
EEECCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEECCCCHHHCCC
NPRDHSVTHAVEKSNAIDVVQIHDVKAELNAAKDNLGEELREKIQDLDISKLPLSIAFKA
CCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
QLDSPLKVVVATSKEIFELESTSLLMAAGEKSITQKELEKRFKGVSNSDYEFSGYDFSQV
CCCCCEEEEEECCHHHEEECCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHC
DEGLILPFKELSDLKDQIAYRLNGNKAVIKHVELPKLAQKPKVEQQPKLSMLIADIADLK
CCCCEECHHHHHHHHHHHEEEECCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHCCE
ICDATDADIYFKLPESFRRNDKTYINIFSENPRLIPWFPAVLIGKDYNEAVKFLEEVKPA
EECCCCCCEEEECCHHHCCCCCEEEEEECCCCCEEEECCCEEECCCHHHHHHHHHHCCCC
RIVTNNTGIAYKAYEMGIEWVAGPFMNTTNSHALITLKEEFNCAGAFISNEINQGQMKHI
EEEECCCCCEEEHHHCCCHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHC
RRPENFKLLYSIYHPILLMTSRQCFFQQTVGCNKRAIEAGCMIKCEKATTITNMKGVSFA
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEECCCCEEEECCCCEEECCCCCEEE
VDKQKGGYPSIYNHEQFLNMDVVNDLSDLFDEFFIDLTNIGGGSKEQADIVKLATHFEAL
EECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
VKGETAVQEALYSMVPINTHNQYVKGL
HCCHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]