| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is 59711962
Identifier: 59711962
GI number: 59711962
Start: 1499161
End: 1500426
Strand: Reverse
Name: 59711962
Synonym: VF_1355
Alternate gene names: NA
Gene position: 1500426-1499161 (Counterclockwise)
Preceding gene: 172087700
Following gene: 59711961
Centisome position: 51.78
GC content: 34.36
Gene sequence:
>1266_bases ATGGAAAGACCTGTAGTAGATGAAATTTATGAAATTCTGGTAAATGGTGACTTAGAAAGGTTGGAGAATATTTCTCGACC TCAGGATGCAGTTTACATTCGGACAGTTATATCTACAGAGTCATCTAATGCAGCTGGTTTGCATATTAATTTAGAAGATA TAACAAATAAAGCCCCTTGGATAACACCTCTTTTTATTGGACCTAAGGTATTCCTTAATTCTGCCTCTACGGCTCTTCAA AGTCATTTAACTGGTGGGCAATCTTCAGTTCCGATCGATTGGAGTTTCTCTTTTGACTCGAATGTTGGTGAACGTGTGAG AGCTTATGTGAATCATGAAAATATAAATAAGAAAGATCAAGATAGGATCATTACTTTAATTAAGCTAAAAAAAGAGTACT CACTTCAGACGGATCTAGTACCATTTTTATTCGAGAATTTAAGGTTGTCACGTGAAGATAATAAAAACCTTCGCCCCCTA AACACTATTTTAGCTTTTAAAAAACTTGATCATATAGACTGGGAAAGTTTTGAAAAAGATCCTTATAAGCCTAAATTCAT GTGTAACGAGCAAGAGTTGCTAAAAGAGTCGGAGGAGGATTACGAAAGTTTTGTAACCAATGAAGAGGTTAAAAATCGAG AGTATAAGGCTGTTTTTACTCAGATTATATTGTTTGAATTAGCTATTTTGTGGTTAAAAAATCCAGCTAAACCAGATGAG GTCTTTCGTAAACTAATAGATTTTTGTGTGTTGCAATTGGGTAAACTGCCAAAATATGAATTGCTTGTAGCTCTTCAATT TCTAGAAAAACCAAAGCGTGTACGTTTCTTTGGTCCGGTAGCCGATGTTGCAAAAAATATTGAAACAGCACTAAAAGGAA TGGCGTGGGACATTTCTCATATGCGAACGTTGGAAACTATGTCAACAATTACGGCTTTAGGTTCGTTTTTTTTGCCTTTC TTTGTTTCGTTCGATGATAAATTCTCGGAGATATTGAAGTTAAATCAAATTAACTTTCTTGTAATAGATGACAGATTAAA ACGTATGCATAGTGCAAGTATCCATGAGTTACATTTTCAAATTAAATTAAATGAGTGTATGTCTGAAGAGGTATTAAGTA AGTCTTCGCATAAAGAATCGGAAATGAGAAAGCAGTATACTTTACCTATCAATGATTTGCAGCATATCCTGAAGCATCAA GAAGTAACATTAAAAGCAATAGCTGATGAAGTCAGGGCTAGTAAGAAAGCAAAAAGAAATGCTTAA
Upstream 100 bases:
>100_bases TATGCGCTGCGTTTTGTGTTTAAAGTGGTATGCAGGAGTTTCGATATTTCGTTGCTTACATTTTAACATAGCGTTAAGCG TTTCAAAGTTTGAGGAAAAT
Downstream 100 bases:
>100_bases CAAAGTATTTAAGAGTGAATTAATTAGGAACTACCGTGAAAATCGTAGAATTACAAGAAAAAGAATCTTTGTATTATTGT ACTAAAGATGAAGACCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MERPVVDEIYEILVNGDLERLENISRPQDAVYIRTVISTESSNAAGLHINLEDITNKAPWITPLFIGPKVFLNSASTALQ SHLTGGQSSVPIDWSFSFDSNVGERVRAYVNHENINKKDQDRIITLIKLKKEYSLQTDLVPFLFENLRLSREDNKNLRPL NTILAFKKLDHIDWESFEKDPYKPKFMCNEQELLKESEEDYESFVTNEEVKNREYKAVFTQIILFELAILWLKNPAKPDE VFRKLIDFCVLQLGKLPKYELLVALQFLEKPKRVRFFGPVADVAKNIETALKGMAWDISHMRTLETMSTITALGSFFLPF FVSFDDKFSEILKLNQINFLVIDDRLKRMHSASIHELHFQIKLNECMSEEVLSKSSHKESEMRKQYTLPINDLQHILKHQ EVTLKAIADEVRASKKAKRNA
Sequences:
>Translated_421_residues MERPVVDEIYEILVNGDLERLENISRPQDAVYIRTVISTESSNAAGLHINLEDITNKAPWITPLFIGPKVFLNSASTALQ SHLTGGQSSVPIDWSFSFDSNVGERVRAYVNHENINKKDQDRIITLIKLKKEYSLQTDLVPFLFENLRLSREDNKNLRPL NTILAFKKLDHIDWESFEKDPYKPKFMCNEQELLKESEEDYESFVTNEEVKNREYKAVFTQIILFELAILWLKNPAKPDE VFRKLIDFCVLQLGKLPKYELLVALQFLEKPKRVRFFGPVADVAKNIETALKGMAWDISHMRTLETMSTITALGSFFLPF FVSFDDKFSEILKLNQINFLVIDDRLKRMHSASIHELHFQIKLNECMSEEVLSKSSHKESEMRKQYTLPINDLQHILKHQ EVTLKAIADEVRASKKAKRNA >Mature_421_residues MERPVVDEIYEILVNGDLERLENISRPQDAVYIRTVISTESSNAAGLHINLEDITNKAPWITPLFIGPKVFLNSASTALQ SHLTGGQSSVPIDWSFSFDSNVGERVRAYVNHENINKKDQDRIITLIKLKKEYSLQTDLVPFLFENLRLSREDNKNLRPL NTILAFKKLDHIDWESFEKDPYKPKFMCNEQELLKESEEDYESFVTNEEVKNREYKAVFTQIILFELAILWLKNPAKPDE VFRKLIDFCVLQLGKLPKYELLVALQFLEKPKRVRFFGPVADVAKNIETALKGMAWDISHMRTLETMSTITALGSFFLPF FVSFDDKFSEILKLNQINFLVIDDRLKRMHSASIHELHFQIKLNECMSEEVLSKSSHKESEMRKQYTLPINDLQHILKHQ EVTLKAIADEVRASKKAKRNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48852; Mature: 48852
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERPVVDEIYEILVNGDLERLENISRPQDAVYIRTVISTESSNAAGLHINLEDITNKAPW CCCCHHHHHHHHHHCCCHHHHHCCCCCCHHEEEEEEEECCCCCCCEEEEEHHHHCCCCCC ITPLFIGPKVFLNSASTALQSHLTGGQSSVPIDWSFSFDSNVGERVRAYVNHENINKKDQ EEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCH DRIITLIKLKKEYSLQTDLVPFLFENLRLSREDNKNLRPLNTILAFKKLDHIDWESFEKD HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCC PYKPKFMCNEQELLKESEEDYESFVTNEEVKNREYKAVFTQIILFELAILWLKNPAKPDE CCCCCCCCCHHHHHHCCHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHH VFRKLIDFCVLQLGKLPKYELLVALQFLEKPKRVRFFGPVADVAKNIETALKGMAWDISH HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH MRTLETMSTITALGSFFLPFFVSFDDKFSEILKLNQINFLVIDDRLKRMHSASIHELHFQ HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHHHHHHHCCCHHHEEEE IKLNECMSEEVLSKSSHKESEMRKQYTLPINDLQHILKHQEVTLKAIADEVRASKKAKRN EEHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC A C >Mature Secondary Structure MERPVVDEIYEILVNGDLERLENISRPQDAVYIRTVISTESSNAAGLHINLEDITNKAPW CCCCHHHHHHHHHHCCCHHHHHCCCCCCHHEEEEEEEECCCCCCCEEEEEHHHHCCCCCC ITPLFIGPKVFLNSASTALQSHLTGGQSSVPIDWSFSFDSNVGERVRAYVNHENINKKDQ EEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCH DRIITLIKLKKEYSLQTDLVPFLFENLRLSREDNKNLRPLNTILAFKKLDHIDWESFEKD HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCC PYKPKFMCNEQELLKESEEDYESFVTNEEVKNREYKAVFTQIILFELAILWLKNPAKPDE CCCCCCCCCHHHHHHCCHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHH VFRKLIDFCVLQLGKLPKYELLVALQFLEKPKRVRFFGPVADVAKNIETALKGMAWDISH HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH MRTLETMSTITALGSFFLPFFVSFDDKFSEILKLNQINFLVIDDRLKRMHSASIHELHFQ HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHHHHHHHCCCHHHEEEE IKLNECMSEEVLSKSSHKESEMRKQYTLPINDLQHILKHQEVTLKAIADEVRASKKAKRN EEHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA