| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is apr [H]
Identifier: 59711956
GI number: 59711956
Start: 1491324
End: 1493066
Strand: Reverse
Name: apr [H]
Synonym: VF_1349
Alternate gene names: 59711956
Gene position: 1493066-1491324 (Counterclockwise)
Preceding gene: 59711958
Following gene: 59711955
Centisome position: 51.53
GC content: 40.79
Gene sequence:
>1743_bases ATGAATTGTATAACAGCTAAATTAAATAGTTTATTTTCATTGTCTATCATTGTAGTAGCTATGATTTTTTCAATGCAAGT TAATGCGGTTACTTCCTTAAGGGAAGTCGACGAATCTAACTTCCCGAAAAAATATATTGTTAAATTTAAAGAAGATGCGT CTAGTTTTTCAGAGTTGAGTGAAATGAGTGAAAACCAGCATGTAACGGAAGAGTTAGTTTTAGAAAAGCTTAAAGCACGT GAAGTGAAAAGGTTAGGAAACAGTACTATTTACAGTGTGGAGATGGGAGACTTGAAGTTGGAGCAATTGCGTAATCGTAG CGATGTGGAATACGTAGAAATTGACCAACCCCGTTTTTTATTAAGAAGAGCTTCTCCTGATATATGGAGTGGTGAAACTA CACCTTGGGGCTATGAGGTGGTTGGGGCTCAGGTTGTTGATGATTTTAATGCAGGTAACCGTACAGTGTGTATCATTGAT ACAGGTTACGATATAAAGCACAACGATCTGAGTGGTAACCGCGTTTCAGGGCCTAATGTCTCCGATTCTAATTCTGACTT TCCTTGGAGTGTTCCAGATCCTGGGGGAGATAACAGCCACGGAACTCACGTAGCAGGTACGATCTCTGCGATTGCTAACT CGGAAGGTATCAAAGGGATCATGCCAAATCAAAAAGTGAATTTGTACATCGTGAAAGCGTTGAATGAAAATGGTTGGGTC TACTCATCAGATTTGGTGAAAGCCGTACAAACTTGTGTAGACAATGGTGCAAATGTTATCAACATGAGTTTAGGTGGTTC TAAATCGACAATGACCGAAAAAAACGGGCTACAATCTATCTATGAGAAAGGCGTATTATTAATTGCAGCTGCTGGTAATG ATGGTGATACTAGTTACTCTTTCCCGGCTTCTTATGATTCCGTAATGTCGGTTGCCGCAGTGGATAGTAATCTTGAACAC GCAGCTTTTTCTCAAATAACAGACCAAGTTGAAATAGCTGCTCCGGGTGTGGCAATTTTGTCTACCGTTACAGTTGGTGA AGGTGTGCTTTCAGACATTAGTTTAAACGGTCTTAGTCAGTTTAAGCGTGGTATCGTGCCATACAAGCGTAGGATAATGA AGGATGAACAATACATTTCAGACCTAGTTACAGGTTCAATCACGGGTATTTTAAAACGTTGTGATTTGTTGTTTGACGGC ACTTACAAATGTGGTGATATGTCGAACAGTATCTGTTTGATTGAACGCCAGCATGTTAAAAAACAGGATAAAATGTCATT AGATAATCGCTTGATTAAAACGTGTTCTGATGCTGGGGCAATCGCAGCGATTGTGTATAGTAACGCTAAACTACCAGGCT TACAGAATCCTTCTATTGTAGATGAAAAAAATGTAGCACGTATTGTCTCAGTAACGGTTGATCATCCCTTTGGTCAGACG TTATTGGGCTACATAGGTAAAGAGGTCACAGTTTCGACTAGTGAGGGGAAAGACTATGAGTATTACAGTGGTACTTCAAT GGCGACGCCGCATGTAGCGGGTGTTGCTAGCTTAGTGTGGAGTTATCACCCAACGTGTACCGCAGCACAAGTACGTAGAG CGCTAACCGAAACCTCAATTGATATTGCCGAAGTAGGCCGTGATAACAGGACTGGTTATGGTATGGTAAATGCTTATGCC GCAGAACGTTATTTAGATACACTCTGTGGTGAATTGGATTGGGGGCCTTTACCTACGTTATAA
Upstream 100 bases:
>100_bases TTGCTTTATTGTCACAAGTGTATTTAAGGAGTTAGATTTGAGCTGCTTTGATGCAATAGGAATCAGCTTTCGAATCAGCT TTCAAAGAGGAATAAATAAA
Downstream 100 bases:
>100_bases TGTTTTTGATAAATTGAAATTATATACCCTTACATCCTCGGCACAAATCACGAGGATGTAAGCTATTGTTTTATTTTTGT GTATCAACTGTTTATTAAAA
Product: subtilisin-like serine protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MNCITAKLNSLFSLSIIVVAMIFSMQVNAVTSLREVDESNFPKKYIVKFKEDASSFSELSEMSENQHVTEELVLEKLKAR EVKRLGNSTIYSVEMGDLKLEQLRNRSDVEYVEIDQPRFLLRRASPDIWSGETTPWGYEVVGAQVVDDFNAGNRTVCIID TGYDIKHNDLSGNRVSGPNVSDSNSDFPWSVPDPGGDNSHGTHVAGTISAIANSEGIKGIMPNQKVNLYIVKALNENGWV YSSDLVKAVQTCVDNGANVINMSLGGSKSTMTEKNGLQSIYEKGVLLIAAAGNDGDTSYSFPASYDSVMSVAAVDSNLEH AAFSQITDQVEIAAPGVAILSTVTVGEGVLSDISLNGLSQFKRGIVPYKRRIMKDEQYISDLVTGSITGILKRCDLLFDG TYKCGDMSNSICLIERQHVKKQDKMSLDNRLIKTCSDAGAIAAIVYSNAKLPGLQNPSIVDEKNVARIVSVTVDHPFGQT LLGYIGKEVTVSTSEGKDYEYYSGTSMATPHVAGVASLVWSYHPTCTAAQVRRALTETSIDIAEVGRDNRTGYGMVNAYA AERYLDTLCGELDWGPLPTL
Sequences:
>Translated_580_residues MNCITAKLNSLFSLSIIVVAMIFSMQVNAVTSLREVDESNFPKKYIVKFKEDASSFSELSEMSENQHVTEELVLEKLKAR EVKRLGNSTIYSVEMGDLKLEQLRNRSDVEYVEIDQPRFLLRRASPDIWSGETTPWGYEVVGAQVVDDFNAGNRTVCIID TGYDIKHNDLSGNRVSGPNVSDSNSDFPWSVPDPGGDNSHGTHVAGTISAIANSEGIKGIMPNQKVNLYIVKALNENGWV YSSDLVKAVQTCVDNGANVINMSLGGSKSTMTEKNGLQSIYEKGVLLIAAAGNDGDTSYSFPASYDSVMSVAAVDSNLEH AAFSQITDQVEIAAPGVAILSTVTVGEGVLSDISLNGLSQFKRGIVPYKRRIMKDEQYISDLVTGSITGILKRCDLLFDG TYKCGDMSNSICLIERQHVKKQDKMSLDNRLIKTCSDAGAIAAIVYSNAKLPGLQNPSIVDEKNVARIVSVTVDHPFGQT LLGYIGKEVTVSTSEGKDYEYYSGTSMATPHVAGVASLVWSYHPTCTAAQVRRALTETSIDIAEVGRDNRTGYGMVNAYA AERYLDTLCGELDWGPLPTL >Mature_580_residues MNCITAKLNSLFSLSIIVVAMIFSMQVNAVTSLREVDESNFPKKYIVKFKEDASSFSELSEMSENQHVTEELVLEKLKAR EVKRLGNSTIYSVEMGDLKLEQLRNRSDVEYVEIDQPRFLLRRASPDIWSGETTPWGYEVVGAQVVDDFNAGNRTVCIID TGYDIKHNDLSGNRVSGPNVSDSNSDFPWSVPDPGGDNSHGTHVAGTISAIANSEGIKGIMPNQKVNLYIVKALNENGWV YSSDLVKAVQTCVDNGANVINMSLGGSKSTMTEKNGLQSIYEKGVLLIAAAGNDGDTSYSFPASYDSVMSVAAVDSNLEH AAFSQITDQVEIAAPGVAILSTVTVGEGVLSDISLNGLSQFKRGIVPYKRRIMKDEQYISDLVTGSITGILKRCDLLFDG TYKCGDMSNSICLIERQHVKKQDKMSLDNRLIKTCSDAGAIAAIVYSNAKLPGLQNPSIVDEKNVARIVSVTVDHPFGQT LLGYIGKEVTVSTSEGKDYEYYSGTSMATPHVAGVASLVWSYHPTCTAAQVRRALTETSIDIAEVGRDNRTGYGMVNAYA AERYLDTLCGELDWGPLPTL
Specific function: Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320775, Length=347, Percent_Identity=26.2247838616715, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6319893, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324576, Length=237, Percent_Identity=28.6919831223629, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: =3.4.21.62 [H]
Molecular weight: Translated: 63058; Mature: 63058
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNCITAKLNSLFSLSIIVVAMIFSMQVNAVTSLREVDESNFPKKYIVKFKEDASSFSELS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEHHHHHHHHHHH EMSENQHVTEELVLEKLKAREVKRLGNSTIYSVEMGDLKLEQLRNRSDVEYVEIDQPRFL HHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCEEEEECCCHHH LRRASPDIWSGETTPWGYEVVGAQVVDDFNAGNRTVCIIDTGYDIKHNDLSGNRVSGPNV HHHCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCC SDSNSDFPWSVPDPGGDNSHGTHVAGTISAIANSEGIKGIMPNQKVNLYIVKALNENGWV CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCE YSSDLVKAVQTCVDNGANVINMSLGGSKSTMTEKNGLQSIYEKGVLLIAAAGNDGDTSYS EHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC FPASYDSVMSVAAVDSNLEHAAFSQITDQVEIAAPGVAILSTVTVGEGVLSDISLNGLSQ CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHCCCHHHHCCHHHHHH FKRGIVPYKRRIMKDEQYISDLVTGSITGILKRCDLLFDGTYKCGDMSNSICLIERQHVK HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHCC KQDKMSLDNRLIKTCSDAGAIAAIVYSNAKLPGLQNPSIVDEKNVARIVSVTVDHPFGQT HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHH LLGYIGKEVTVSTSEGKDYEYYSGTSMATPHVAGVASLVWSYHPTCTAAQVRRALTETSI HHHHCCCCEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC DIAEVGRDNRTGYGMVNAYAAERYLDTLCGELDWGPLPTL CHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNCITAKLNSLFSLSIIVVAMIFSMQVNAVTSLREVDESNFPKKYIVKFKEDASSFSELS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEHHHHHHHHHHH EMSENQHVTEELVLEKLKAREVKRLGNSTIYSVEMGDLKLEQLRNRSDVEYVEIDQPRFL HHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCEEEEECCCHHH LRRASPDIWSGETTPWGYEVVGAQVVDDFNAGNRTVCIIDTGYDIKHNDLSGNRVSGPNV HHHCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCC SDSNSDFPWSVPDPGGDNSHGTHVAGTISAIANSEGIKGIMPNQKVNLYIVKALNENGWV CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCE YSSDLVKAVQTCVDNGANVINMSLGGSKSTMTEKNGLQSIYEKGVLLIAAAGNDGDTSYS EHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC FPASYDSVMSVAAVDSNLEHAAFSQITDQVEIAAPGVAILSTVTVGEGVLSDISLNGLSQ CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHCCCHHHHCCHHHHHH FKRGIVPYKRRIMKDEQYISDLVTGSITGILKRCDLLFDGTYKCGDMSNSICLIERQHVK HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHCC KQDKMSLDNRLIKTCSDAGAIAAIVYSNAKLPGLQNPSIVDEKNVARIVSVTVDHPFGQT HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHH LLGYIGKEVTVSTSEGKDYEYYSGTSMATPHVAGVASLVWSYHPTCTAAQVRRALTETSI HHHHCCCCEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC DIAEVGRDNRTGYGMVNAYAAERYLDTLCGELDWGPLPTL CHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6420308; 9826175 [H]