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The map label for this gene is 59711937

Identifier: 59711937

GI number: 59711937

Start: 1477585

End: 1478916

Strand: Direct

Name: 59711937

Synonym: VF_1330

Alternate gene names: NA

Gene position: 1477585-1478916 (Clockwise)

Preceding gene: 59711929

Following gene: 59711940

Centisome position: 50.99

GC content: 37.76

Gene sequence:

>1332_bases
ATGTACAAACCAAGAGGCTCTTTAGTCACCGCTTATCTTACTTTACTCATATCTACATCAGTTGTTGCGAGTAATACACC
ACTAAAAAAAGATAACGTGCCTCCATCAGAGTTGCCACCAATTCAAATTAAGCATACACCCATGTTTATTAGTCTAGGCT
TTGATGATAATGTCGAAAAAGATGGCCTAGAATGGGTTATTAAGGAATTGAAAAAGAACAAAAACCCAGATGGTAATGAC
CGCTTTGCTAACCTTCCCTTATCTGCTTCATTTTTTATGCATTGTGCTCCAGCACGTGAAAATACAGAAATAAAAAAGTT
ATGGCGTCAATTGGTTACGGATAATCATGATATTGGCAATCACACAGAAACACATCCTGACGATAAAGTGAATTATAATC
CTTTAACATCATGGATGACTCCAGAGCAATGGCACACAGAAGTTGCTGATTGTAATAAACTACTAATGGCAGCATCGGAC
AATGGTGGTCTAGGTATTGAACATGTTTCAGGTTTTCGTGCCCCTTACATGACATACAATGACAACACACTCAATGCATT
AATTGAAAATAACATTGTTTATGATGTTAGCTTTCCTGCGGGAATTACACCTGAGCAAAATGGTCAAAACAACTACTGGC
CATATACCCTAGATAATGGAAGCCCATCTCATAATGCAGCAGTCAGTGGTTGGTGGAAACCTGTTATAAATAACTATCCC
GGTTTATGGGAGATCCCCCTTCACACCTTAATTGTTCCGCCTGATGAACTATTAGAACAATATGAATTAAACTATTCTCT
TAGAGATAAAATAGCGAGTCGTATTAGTTATTTCGATCCAATTTCTGGTAAAGGTGACAATTTTGATTGGAATTTATATT
CAACACCTAATTGGGGAGCGGCCGGCCTTAATGAAAATGATGTTGTTGCCATTTATAAATATAACCTAGATTTAAGAATA
CAAGGGAATCGAGCCCCACTTGTCCTTGGATTACATTCTGCATTCTATGGTTATATTGGTGGTGAAGAACATATTGGAAT
GCCAGAAAGTAATGTCGATACACGTAGAAATGTTTTAAAACGTTTTATTAAATACGCTTTATCTAAACCTGAAGTAAGAT
TTGTAAACCATAAACAAATTATTGACTGGATGCGTACACCTGAACCTCTAACATTATGCCCACAGGAAGAATGGAAACCT
CACCAAGTGTATATCAAAGGCGAAACCGTCAATTTCCAAGGCAAGATGTGGCAAGCGCAATGGTGGACTCAATTACAACA
GCCAGGGCTGACTGAAAGCTCTCCATGGAAAAAAGTCACTTCTTGTACATAA

Upstream 100 bases:

>100_bases
TCGCATTTATTCCTTTTCATCGCACAAGCTTTTCTTCCTTTTTTGTTTTCTTTCCCTCCTTTACTAGACTGCTATTCTCA
TTAACTAAAAGGAATTAATT

Downstream 100 bases:

>100_bases
CAAATACCAACGCCCCCTTTCTATTAGTAAAGGGGGTTCATTATCAAGGTTACACCCCTAGCGGATTAGGGAATTGCACT
ACTTTAATGTCATAAATTTT

Product: carbohydrate binding domain-containing protein

Products: NA

Alternate protein names: Polysaccharide Deacetylase

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MYKPRGSLVTAYLTLLISTSVVASNTPLKKDNVPPSELPPIQIKHTPMFISLGFDDNVEKDGLEWVIKELKKNKNPDGND
RFANLPLSASFFMHCAPARENTEIKKLWRQLVTDNHDIGNHTETHPDDKVNYNPLTSWMTPEQWHTEVADCNKLLMAASD
NGGLGIEHVSGFRAPYMTYNDNTLNALIENNIVYDVSFPAGITPEQNGQNNYWPYTLDNGSPSHNAAVSGWWKPVINNYP
GLWEIPLHTLIVPPDELLEQYELNYSLRDKIASRISYFDPISGKGDNFDWNLYSTPNWGAAGLNENDVVAIYKYNLDLRI
QGNRAPLVLGLHSAFYGYIGGEEHIGMPESNVDTRRNVLKRFIKYALSKPEVRFVNHKQIIDWMRTPEPLTLCPQEEWKP
HQVYIKGETVNFQGKMWQAQWWTQLQQPGLTESSPWKKVTSCT

Sequences:

>Translated_443_residues
MYKPRGSLVTAYLTLLISTSVVASNTPLKKDNVPPSELPPIQIKHTPMFISLGFDDNVEKDGLEWVIKELKKNKNPDGND
RFANLPLSASFFMHCAPARENTEIKKLWRQLVTDNHDIGNHTETHPDDKVNYNPLTSWMTPEQWHTEVADCNKLLMAASD
NGGLGIEHVSGFRAPYMTYNDNTLNALIENNIVYDVSFPAGITPEQNGQNNYWPYTLDNGSPSHNAAVSGWWKPVINNYP
GLWEIPLHTLIVPPDELLEQYELNYSLRDKIASRISYFDPISGKGDNFDWNLYSTPNWGAAGLNENDVVAIYKYNLDLRI
QGNRAPLVLGLHSAFYGYIGGEEHIGMPESNVDTRRNVLKRFIKYALSKPEVRFVNHKQIIDWMRTPEPLTLCPQEEWKP
HQVYIKGETVNFQGKMWQAQWWTQLQQPGLTESSPWKKVTSCT
>Mature_443_residues
MYKPRGSLVTAYLTLLISTSVVASNTPLKKDNVPPSELPPIQIKHTPMFISLGFDDNVEKDGLEWVIKELKKNKNPDGND
RFANLPLSASFFMHCAPARENTEIKKLWRQLVTDNHDIGNHTETHPDDKVNYNPLTSWMTPEQWHTEVADCNKLLMAASD
NGGLGIEHVSGFRAPYMTYNDNTLNALIENNIVYDVSFPAGITPEQNGQNNYWPYTLDNGSPSHNAAVSGWWKPVINNYP
GLWEIPLHTLIVPPDELLEQYELNYSLRDKIASRISYFDPISGKGDNFDWNLYSTPNWGAAGLNENDVVAIYKYNLDLRI
QGNRAPLVLGLHSAFYGYIGGEEHIGMPESNVDTRRNVLKRFIKYALSKPEVRFVNHKQIIDWMRTPEPLTLCPQEEWKP
HQVYIKGETVNFQGKMWQAQWWTQLQQPGLTESSPWKKVTSCT

Specific function: Unknown

COG id: COG3979

COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI24580511, Length=215, Percent_Identity=26.046511627907, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076598, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161076596, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50544; Mature: 50544

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKPRGSLVTAYLTLLISTSVVASNTPLKKDNVPPSELPPIQIKHTPMFISLGFDDNVEK
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCC
DGLEWVIKELKKNKNPDGNDRFANLPLSASFFMHCAPARENTEIKKLWRQLVTDNHDIGN
CHHHHHHHHHHHCCCCCCCCCEEECCCCCEEHEEECCCCCCCHHHHHHHHHHCCCCCCCC
HTETHPDDKVNYNPLTSWMTPEQWHTEVADCNKLLMAASDNGGLGIEHVSGFRAPYMTYN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHCCCCCCEEEEC
DNTLNALIENNIVYDVSFPAGITPEQNGQNNYWPYTLDNGSPSHNAAVSGWWKPVINNYP
CCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCHHHHHCCCC
GLWEIPLHTLIVPPDELLEQYELNYSLRDKIASRISYFDPISGKGDNFDWNLYSTPNWGA
CEEECCCEEEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
AGLNENDVVAIYKYNLDLRIQGNRAPLVLGLHSAFYGYIGGEEHIGMPESNVDTRRNVLK
CCCCCCCEEEEEEEEEEEEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
RFIKYALSKPEVRFVNHKQIIDWMRTPEPLTLCPQEEWKPHQVYIKGETVNFQGKMWQAQ
HHHHHHHCCCCEEECCHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECEEECCCCEEHHH
WWTQLQQPGLTESSPWKKVTSCT
HHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MYKPRGSLVTAYLTLLISTSVVASNTPLKKDNVPPSELPPIQIKHTPMFISLGFDDNVEK
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCC
DGLEWVIKELKKNKNPDGNDRFANLPLSASFFMHCAPARENTEIKKLWRQLVTDNHDIGN
CHHHHHHHHHHHCCCCCCCCCEEECCCCCEEHEEECCCCCCCHHHHHHHHHHCCCCCCCC
HTETHPDDKVNYNPLTSWMTPEQWHTEVADCNKLLMAASDNGGLGIEHVSGFRAPYMTYN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHCCCCCCEEEEC
DNTLNALIENNIVYDVSFPAGITPEQNGQNNYWPYTLDNGSPSHNAAVSGWWKPVINNYP
CCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEECCCHHHHHCCCC
GLWEIPLHTLIVPPDELLEQYELNYSLRDKIASRISYFDPISGKGDNFDWNLYSTPNWGA
CEEECCCEEEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
AGLNENDVVAIYKYNLDLRIQGNRAPLVLGLHSAFYGYIGGEEHIGMPESNVDTRRNVLK
CCCCCCCEEEEEEEEEEEEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
RFIKYALSKPEVRFVNHKQIIDWMRTPEPLTLCPQEEWKPHQVYIKGETVNFQGKMWQAQ
HHHHHHHCCCCEEECCHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECEEECCCCEEHHH
WWTQLQQPGLTESSPWKKVTSCT
HHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA