Click here to switch to the map view.

The map label for this gene is yebR [H]

Identifier: 59711885

GI number: 59711885

Start: 1421443

End: 1421895

Strand: Direct

Name: yebR [H]

Synonym: VF_1278

Alternate gene names: 59711885

Gene position: 1421443-1421895 (Clockwise)

Preceding gene: 59711879

Following gene: 59711886

Centisome position: 49.06

GC content: 36.64

Gene sequence:

>453_bases
ATGGAATTAAAACATTACGCGCGATTAACACAGCAAGCACTGGGTTTGATTGAAGGTGAAACTGATTATATTGCAAATTT
GGCGAATATCAGTGCACTATTGAATATGGAATTGGATGACATTAATTGGGTAGGTTTTTATCTATTTAAAGAAAATGAAT
TAGTTTTAGGTCCATTTCAAGGTAAGCCCGCTTGTATTCGAATTAGTGTAGGGAAGGGAGTGTGTGGCACAGCCTTCGCT
ACAAAAACTGTTCAACGTATTGACGATGTTCATCAATTTGCTGGTCACATTGCTTGTGATGCAGAAAGTAACTCTGAAAT
AGTGATTCCATTTTATCGAAACGGAGAACTTGCAGGAGTGTTGGATATTGATAGTCCAAAATTTAATCGATTTAGCGAAA
TCGACGAAAAAGGACTGGTTGATTTCATGAAAGAAGCAGAAAAGAGACTTTAA

Upstream 100 bases:

>100_bases
TCATAGTGATAATGATTCCTATTATTATCTTTTCAAGGGCATTGTACTCAGTATAAATAGAGTCGCAAGTGATTGGTACA
AATACAGGATAAATAAAAAG

Downstream 100 bases:

>100_bases
TTTTCTTTCAGTAGTGGTTTTTCACGCTTAAGTATCTATAATAGCGGAATATCTTTACTAGAAATAAACCTAAATACGGC
TAGAACCGTACTATCAGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MELKHYARLTQQALGLIEGETDYIANLANISALLNMELDDINWVGFYLFKENELVLGPFQGKPACIRISVGKGVCGTAFA
TKTVQRIDDVHQFAGHIACDAESNSEIVIPFYRNGELAGVLDIDSPKFNRFSEIDEKGLVDFMKEAEKRL

Sequences:

>Translated_150_residues
MELKHYARLTQQALGLIEGETDYIANLANISALLNMELDDINWVGFYLFKENELVLGPFQGKPACIRISVGKGVCGTAFA
TKTVQRIDDVHQFAGHIACDAESNSEIVIPFYRNGELAGVLDIDSPKFNRFSEIDEKGLVDFMKEAEKRL
>Mature_150_residues
MELKHYARLTQQALGLIEGETDYIANLANISALLNMELDDINWVGFYLFKENELVLGPFQGKPACIRISVGKGVCGTAFA
TKTVQRIDDVHQFAGHIACDAESNSEIVIPFYRNGELAGVLDIDSPKFNRFSEIDEKGLVDFMKEAEKRL

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=145, Percent_Identity=58.6206896551724, Blast_Score=174, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6322781, Length=138, Percent_Identity=46.3768115942029, Blast_Score=124, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 16742; Mature: 16742

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKHYARLTQQALGLIEGETDYIANLANISALLNMELDDINWVGFYLFKENELVLGPFQ
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCEEEEEEEECCCEEEECCC
GKPACIRISVGKGVCGTAFATKTVQRIDDVHQFAGHIACDAESNSEIVIPFYRNGELAGV
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCEEEEEECCCCEEEE
LDIDSPKFNRFSEIDEKGLVDFMKEAEKRL
EECCCCCCCCHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELKHYARLTQQALGLIEGETDYIANLANISALLNMELDDINWVGFYLFKENELVLGPFQ
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCCEEEEEEEECCCEEEECCC
GKPACIRISVGKGVCGTAFATKTVQRIDDVHQFAGHIACDAESNSEIVIPFYRNGELAGV
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCEEEEEECCCCEEEE
LDIDSPKFNRFSEIDEKGLVDFMKEAEKRL
EECCCCCCCCHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 10493123 [H]