| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is pheC [H]
Identifier: 59711877
GI number: 59711877
Start: 1410161
End: 1410925
Strand: Reverse
Name: pheC [H]
Synonym: VF_1270
Alternate gene names: 59711877
Gene position: 1410925-1410161 (Counterclockwise)
Preceding gene: 59711880
Following gene: 59711876
Centisome position: 48.69
GC content: 39.48
Gene sequence:
>765_bases ATGATGAAAAAGAAACTTTTATGCATATCTGTGCTATTTGCCGCTTCCTTCACAGCTCACGCAGATCGCTTAGATGAAAT CCAAGAAGCCGGAATTATTCGAGTCGGTACAACGGGTGACTATAAGCCCTTCTCTTCTTTCGATGGTAAGCAATTTTCTG GTTATGATATTGATGTTGCCAAATACATAGCAGAACAGCTAGATGTAAAATTAGAGTTAGTTCAAACCTCATGGAAAAAT CTCATTCCCGATCTTAATGCTGACAAATACGACATCGCAATGGGCGGCATCACACGTAAAATACAGCGTCAGCTGCATGC TGAACAAAGCCAAGGCTACATGACTTTTGGTAAATGCTTCCTTGTCGCAAAAGGAAAAGCTGAAACTTATAACACCATTG ATAAAGTCAATAAATCAAGTACTCGTTTAGGTATTAACATTGGCGGTACTAATGAGATATTTGCTGATACTCATCTACAA AGTGCAACATTCACACGTTACAAAAATAACCTTGATGTTCCCCAAGCCGTTGCGACAGGAAAAGTTGACGTAATGGTAAC CGAAACACCAGAAGCGCTTTACTACCAAGCAACAGACAAGCGATTAGAAGCGTCTCGCTGCGACGACCCATTCACAAAAA GCCAATTTGGTTATTTAGTACCTAAAGGCGAGCAAGAGCTGCTAAATGCGGTTAACTTCATTATGGATGAAATGAAGCTA AAAGGTGTAGATAAAGAATTAATGAAGAAAAATGCCTTGTTATAA
Upstream 100 bases:
>100_bases TCACTCATGTTTTTTTATCGTTATTTATAGAATGGTTTAATCTGTTTATTTACAAAATAGTGATAAGTTTGTTAGTTAAA TTAATAAACAAAAAGATTTG
Downstream 100 bases:
>100_bases AGTAAGCAGTTAACGATATTTTTTATCTAATCACTTGCTATTTTATTCATTCACACCCAAAATAACGCTGTACTTATATA CAGTGTTATTTTATGAATGT
Product: cyclohexadienyl dehydratase precursor
Products: NA
Alternate protein names: Prephenate dehydratase; Arogenate dehydratase [H]
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MMKKKLLCISVLFAASFTAHADRLDEIQEAGIIRVGTTGDYKPFSSFDGKQFSGYDIDVAKYIAEQLDVKLELVQTSWKN LIPDLNADKYDIAMGGITRKIQRQLHAEQSQGYMTFGKCFLVAKGKAETYNTIDKVNKSSTRLGINIGGTNEIFADTHLQ SATFTRYKNNLDVPQAVATGKVDVMVTETPEALYYQATDKRLEASRCDDPFTKSQFGYLVPKGEQELLNAVNFIMDEMKL KGVDKELMKKNALL
Sequences:
>Translated_254_residues MMKKKLLCISVLFAASFTAHADRLDEIQEAGIIRVGTTGDYKPFSSFDGKQFSGYDIDVAKYIAEQLDVKLELVQTSWKN LIPDLNADKYDIAMGGITRKIQRQLHAEQSQGYMTFGKCFLVAKGKAETYNTIDKVNKSSTRLGINIGGTNEIFADTHLQ SATFTRYKNNLDVPQAVATGKVDVMVTETPEALYYQATDKRLEASRCDDPFTKSQFGYLVPKGEQELLNAVNFIMDEMKL KGVDKELMKKNALL >Mature_254_residues MMKKKLLCISVLFAASFTAHADRLDEIQEAGIIRVGTTGDYKPFSSFDGKQFSGYDIDVAKYIAEQLDVKLELVQTSWKN LIPDLNADKYDIAMGGITRKIQRQLHAEQSQGYMTFGKCFLVAKGKAETYNTIDKVNKSSTRLGINIGGTNEIFADTHLQ SATFTRYKNNLDVPQAVATGKVDVMVTETPEALYYQATDKRLEASRCDDPFTKSQFGYLVPKGEQELLNAVNFIMDEMKL KGVDKELMKKNALL
Specific function: Forms alternative pathway for phenylalanine biosynthesis. Can catalyze two reactions:prephenate dehydratase and arogenate dehydratase. May have a role in chemotaxis or transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=249, Percent_Identity=24.8995983935743, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787031, Length=251, Percent_Identity=25.0996015936255, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788649, Length=259, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787088, Length=255, Percent_Identity=23.1372549019608, Blast_Score=61, Evalue=7e-11,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: =4.2.1.51; =4.2.1.91 [H]
Molecular weight: Translated: 28439; Mature: 28439
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKKLLCISVLFAASFTAHADRLDEIQEAGIIRVGTTGDYKPFSSFDGKQFSGYDIDVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHH KYIAEQLDVKLELVQTSWKNLIPDLNADKYDIAMGGITRKIQRQLHAEQSQGYMTFGKCF HHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEE LVAKGKAETYNTIDKVNKSSTRLGINIGGTNEIFADTHLQSATFTRYKNNLDVPQAVATG EEECCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHCCCCCCCHHHHCC KVDVMVTETPEALYYQATDKRLEASRCDDPFTKSQFGYLVPKGEQELLNAVNFIMDEMKL CEEEEEECCCCCEEEECHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH KGVDKELMKKNALL CCCCHHHHHHCCCC >Mature Secondary Structure MMKKKLLCISVLFAASFTAHADRLDEIQEAGIIRVGTTGDYKPFSSFDGKQFSGYDIDVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHH KYIAEQLDVKLELVQTSWKNLIPDLNADKYDIAMGGITRKIQRQLHAEQSQGYMTFGKCF HHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEE LVAKGKAETYNTIDKVNKSSTRLGINIGGTNEIFADTHLQSATFTRYKNNLDVPQAVATG EEECCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHCCCCCCCHHHHCC KVDVMVTETPEALYYQATDKRLEASRCDDPFTKSQFGYLVPKGEQELLNAVNFIMDEMKL CEEEEEECCCCCEEEECHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH KGVDKELMKKNALL CCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1733946; 10984043; 8515238; 7604006 [H]