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The map label for this gene is yjdC [H]

Identifier: 59711867

GI number: 59711867

Start: 1402379

End: 1402939

Strand: Direct

Name: yjdC [H]

Synonym: VF_1260

Alternate gene names: 59711867

Gene position: 1402379-1402939 (Clockwise)

Preceding gene: 59711865

Following gene: 59711868

Centisome position: 48.4

GC content: 36.01

Gene sequence:

>561_bases
ATGAAAGAAGAAAAAAGAGTAAACGCACTTAAAAAGACAATAGAGCTGTGCGCATTACATGGTTTTCACGGTACGAGCAT
GGATAAAATTACTGCGGCGACGGGGTTATCTAAAGCGACCATTTATAAATATTTTCAATCTAAAGAGAACTTAATTGCTA
ATGCATTAGAGCTGTTTAGCCAACAATCTCTTTCTCATGTTCAAGCTTTGTTTGAAAATACAGAACTGACATTAGAAGAA
AAAATTGCGCTTCGTTTTGAAGGCCTTGCTGGGTGTATTGATATTGAATCATTTAATGGCTGTTATTTTCAATTGGCGTA
CAGTGAATACAGCAGTGAAGATCAAGGTATTACTGAGGTAAGTGCGCAATACAAACAGCGCACACAAGAGCTATTAATCG
AGTTATTTAAAAGACACGATATTAAAGATGCAGAGTTAAAGGCTAAAAAAGCAGGACTAGTTTATAACGGGCTATTGGCA
TCGTTACAGTTAACAAAAGATGCAGAGCTGATTGAACTCGCTCACCAAATGTTTTTAGGGATCATCTTTAAATCTGAATA
A

Upstream 100 bases:

>100_bases
ACTGTTTAGTCTAATTTATCGTTTATTTTGATACTGTCAATCAGTTTTTGAACTAAACAGTTTATTTTGCTAAAATCACA
GCATTAATGGAGAGTGTTAT

Downstream 100 bases:

>100_bases
TGTTTTACGTTTTAATTTCATAGGGAATGAATCATGAAAGTTGCACGTTTAGATCATCTTGTTTTAACGGTTAACAGCAT
TGAAGTGACGAGTCAATTTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKEEKRVNALKKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIANALELFSQQSLSHVQALFENTELTLEE
KIALRFEGLAGCIDIESFNGCYFQLAYSEYSSEDQGITEVSAQYKQRTQELLIELFKRHDIKDAELKAKKAGLVYNGLLA
SLQLTKDAELIELAHQMFLGIIFKSE

Sequences:

>Translated_186_residues
MKEEKRVNALKKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIANALELFSQQSLSHVQALFENTELTLEE
KIALRFEGLAGCIDIESFNGCYFQLAYSEYSSEDQGITEVSAQYKQRTQELLIELFKRHDIKDAELKAKKAGLVYNGLLA
SLQLTKDAELIELAHQMFLGIIFKSE
>Mature_186_residues
MKEEKRVNALKKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIANALELFSQQSLSHVQALFENTELTLEE
KIALRFEGLAGCIDIESFNGCYFQLAYSEYSSEDQGITEVSAQYKQRTQELLIELFKRHDIKDAELKAKKAGLVYNGLLA
SLQLTKDAELIELAHQMFLGIIFKSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=174, Percent_Identity=22.9885057471264, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20994; Mature: 20994

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEEKRVNALKKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIANALELFS
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
QQSLSHVQALFENTELTLEEKIALRFEGLAGCIDIESFNGCYFQLAYSEYSSEDQGITEV
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCEEEEEEEHHCCCCCCCHHHH
SAQYKQRTQELLIELFKRHDIKDAELKAKKAGLVYNGLLASLQLTKDAELIELAHQMFLG
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IIFKSE
HHHCCC
>Mature Secondary Structure
MKEEKRVNALKKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLIANALELFS
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
QQSLSHVQALFENTELTLEEKIALRFEGLAGCIDIESFNGCYFQLAYSEYSSEDQGITEV
HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCEEEEEEEHHCCCCCCCHHHH
SAQYKQRTQELLIELFKRHDIKDAELKAKKAGLVYNGLLASLQLTKDAELIELAHQMFLG
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IIFKSE
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]